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SCNpilot_expt_500_p_scaffold_5789

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_5789_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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365..1003
DNA (639bp) protein (213aa)
RNA polymerase sigma factor RpoH n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ24_9GAMM
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
alternative sigma factor RpoH; K03089 RNA polymerase sigma-32 factor
SCNpilot_expt_500_p_scaffold_5789_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1133..2419)
DNA (1287bp) protein (429aa)
ndh; NADH dehydrogenase (EC:1.6.99.3); K03885 NADH dehydrogenase [EC:1.6.99.3]
NADH dehydrogenase (Ubiquinone) n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ23_9GAMM rbh
NADH dehydrogenase (Ubiquinone) {ECO:0000313|EMBL:EIL89314.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_500_p_scaffold_5789_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2475..3797)
DNA (1323bp) protein (441aa)
C-terminal processing peptidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTB1_9GAMM rbh
C-terminal processing peptidase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_5789_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3941..5113)
DNA (1173bp) protein (391aa)
Membrane-bound metallopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NI19_9GAMM
membrane-bound metallopeptidase
Membrane-bound metallopeptidase {ECO:0000313|EMBL:AGG90590.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_5789_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5235..6008
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX81_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG90587.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_5789_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6109..7116
DNA (1008bp) protein (336aa)
DNA ligase B n=1 Tax=Rhodanobacter denitrificans RepID=I4WX80_9GAMM
NAD-dependent DNA ligase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_5789_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7098..7667
DNA (570bp) protein (190aa)
DNA ligase B n=1 Tax=Rhodanobacter denitrificans RepID=M4NSW7_9GAMM
NAD-dependent DNA ligase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_5789_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7671..8072)
DNA (402bp) protein (134aa)
UPF0225 protein UUA_01469 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTB7_9GAMM
UPF0225 protein UUA_01469 {ECO:0000256|HAMAP-Rule:MF_00612}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_5789_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8110..8706)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX78_9GAMM
putative S-adenosylmethionine-dependent methyltransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_5789_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8720..8917)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTC0_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_5789_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9008..9586)
DNA (579bp) protein (193aa)
Putative membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NKH9_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_5789_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9660..10214)
DNA (555bp) protein (185aa)
Histidine utilization protein HutD n=1 Tax=Rhodanobacter denitrificans RepID=I4WX75_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90581.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_5789_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10211..11338)
DNA (1128bp) protein (376aa)
ATP-dependent DNA helicase DinG n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTS2_9GAMM
ATP-dependent DNA helicase DinG {ECO:0000313|EMBL:EIL90613.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA helicase, Rad3
Displaying 13 items

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