ggKbase home page

SCNpilot_expt_500_p_scaffold_2839

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_2839_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1047
DNA (1047bp) protein (349aa)
Putative copper-transporting p-type ATPase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNZ0_9GAMM
Putative copper-transporting p-type ATPase {ECO:0000313|EMBL:EIM01182.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
copper/silver-translocating P-type ATPase,heavy metal-translocating P-type ATPase, Cd/Co/Hg/Pb/Zn-transporting
SCNpilot_expt_500_p_scaffold_2839_2
unknown

Not on your lists

comp(1286..1576)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_2839_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1688..2962
DNA (1275bp) protein (425aa)
Putative outer membrane efflux protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNZ1_9GAMM
Putative outer membrane efflux protein {ECO:0000313|EMBL:EIM01183.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
outer membrane protein
SCNpilot_expt_500_p_scaffold_2839_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2959..4269
DNA (1311bp) protein (437aa)
Cobalt/zinc/cadmium efflux RND transporter,membrane fusion protein, CzcB family n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSZ9_9GAMM
Cobalt/zinc/cadmium efflux RND transporter,membrane fusion protein, CzcB family {ECO:0000313|EMBL:EIL90340.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
RND family efflux transporter, MFP subunit
SCNpilot_expt_500_p_scaffold_2839_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4266..7448
DNA (3183bp) protein (1061aa)
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNZ3_9GAMM rbh
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA {ECO:0000313|EMBL:EIM01185.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
heavy metal efflux pump, cobalt-zinc-cadmium
SCNpilot_expt_500_p_scaffold_2839_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7452..7793
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFM2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88852.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_2839_7
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8061..9008)
DNA (948bp) protein (316aa)
Formimidoylglutamase {ECO:0000256|HAMAP-Rule:MF_00737, ECO:0000256|SAAS:SAAS00012446}; EC=3.5.3.8 {ECO:0000256|HAMAP-Rule:MF_00737, ECO:0000256|SAAS:SAAS00012446};; Formiminoglutamase {ECO:0000256|HAMAP-Rule:MF_00737}; Formiminoglutamate hydrolase {ECO:0000256|HAMAP-Rule:MF_00737}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
hutG; formimidoylglutamase (formiminoglutamase) (formiminoglutamate hydrolase) protein; K01479 formiminoglutamase [EC:3.5.3.8]
Formimidoylglutamase n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MRR0_PSEPS rbh
SCNpilot_expt_500_p_scaffold_2839_8
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9008..10537)
DNA (1530bp) protein (510aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
hutH; histidine ammonia-lyase (histidase) (EC:4.3.1.3); K01745 histidine ammonia-lyase [EC:4.3.1.3] rbh
Histidine ammonia-lyase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLR1_9GAMM rbh
SCNpilot_expt_500_p_scaffold_2839_9
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10545..10748)
DNA (204bp) protein (68aa)
hutU2; urocanate hydratase (EC:4.2.1.49); K01712 urocanate hydratase [EC:4.2.1.49]
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
Urocanate hydratase n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0EV43_CUPNN
Displaying 9 items

View Taxonomy