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SCNpilot_expt_500_p_scaffold_3012

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_3012_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..582
DNA (582bp) protein (194aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Pseudouridine synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2Z3_9GAMM
pseudouridine synthase family protein
SCNpilot_expt_500_p_scaffold_3012_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(674..1696)
DNA (1023bp) protein (341aa)
O-sialoglycoprotein endopeptidase (EC:3.4.24.57) rbh
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=666685 species="Bacteria; Proteobacteria; Gammapro
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHW4_9GAMM rbh
SCNpilot_expt_500_p_scaffold_3012_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1804..2019
DNA (216bp) protein (72aa)
30S ribosomal protein S21 n=4 Tax=Rhodanobacter RepID=I4WHW5_9GAMM
SSU ribosomal protein S21P
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_3012_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2191..2637
DNA (447bp) protein (149aa)
GatB-Yqey n=1 Tax=Rhodanobacter denitrificans RepID=I4WHW6_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_3012_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2721..2891
DNA (171bp) protein (57aa)
UPF0391 membrane protein UUC_16285 n=1 Tax=Rhodanobacter denitrificans RepID=I4WHW8_9GAMM
Protein of unknown function (DUF1328)
UPF0391 membrane protein R2APBS1_0290 {ECO:0000256|HAMAP-Rule:MF_01361}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_3012_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2990..4726
DNA (1737bp) protein (579aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA primase (EC:2.7.7.-) rbh
DNA primase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W300_9GAMM rbh
SCNpilot_expt_500_p_scaffold_3012_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4809..5477
DNA (669bp) protein (223aa)
DedA protein family n=1 Tax=Rhodanobacter denitrificans RepID=I4WHX0_9GAMM rbh
putative membrane-associated protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_3012_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5597..6652
DNA (1056bp) protein (352aa)
Sodium/bile acid symporter family protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ77_9GAMM rbh
putative Na+-dependent transporter rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_3012_9
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6780..7499)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Pseudoalteromonas luteoviolacea 2ta16 RepID=V4HSG7_9GAMM
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_expt_500_p_scaffold_3012_10
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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7692..8777
DNA (1086bp) protein (362aa)
histidine kinase n=1 Tax=Nevskia ramosa RepID=UPI0003B4FF7B rbh
transmembrane sensor histidine kinase protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_expt_500_p_scaffold_3012_11
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

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8774..9559
DNA (786bp) protein (262aa)
transcriptional regulator n=1 Tax=Nevskia ramosa RepID=UPI0003B68D10 rbh
two-component sensor protein histidine protein kinase, putative rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCNpilot_expt_500_p_scaffold_3012_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9616..12225)
DNA (2610bp) protein (870aa)
Magnesium-transporting ATPase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W303_9GAMM rbh
magnesium-translocating P-type ATPase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 12 items

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