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SCNpilot_expt_500_p_scaffold_3070

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_3070_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..943)
DNA (942bp) protein (314aa)
Amino acid/peptide transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8M5_9GAMM
Amino acid/peptide transporter {ECO:0000313|EMBL:EIL95816.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
proton-dependent oligopeptide transporter (POT) family protein; K03305 proton-dependent oligopeptide transporter, POT family
SCNpilot_expt_500_p_scaffold_3070_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1261..1632
DNA (372bp) protein (124aa)
diacylglycerol kinase (EC:2.7.1.107)
Diacylglycerol kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV35_9GAMM
Diacylglycerol kinase {ECO:0000313|EMBL:EIL91076.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_p_scaffold_3070_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1706..2326
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV34_9GAMM rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_3070_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2328..3191
DNA (864bp) protein (288aa)
Beta-propeller domain-containing protein, methanol dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYZ7_9GAMM rbh
beta-propeller domain-containing protein, methanol dehydrogenase rbh
Beta-propeller domain-containing protein, methanol dehydrogenase {ECO:0000313|EMBL:AGG88058.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_3070_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3193..3696
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8M1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92601.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_3070_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3888..4772
DNA (885bp) protein (295aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Prolipoprotein diacylglyceryl transferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZF8_9GAMM rbh
prolipoprotein diacylglyceryl transferase rbh
SCNpilot_expt_500_p_scaffold_3070_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4917..5927)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WJ02_9GAMM rbh
TIGR00266 family protein rbh
TIGR00266 family protein {ECO:0000313|EMBL:AGG88063.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_3070_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6057..6872
DNA (816bp) protein (272aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
thymidylate synthase (EC:2.1.1.45) rbh
Thymidylate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCF1_9GAMM rbh
SCNpilot_expt_500_p_scaffold_3070_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6964..7452
DNA (489bp) protein (163aa)
dihydrofolate reductase (EC:1.5.1.3) rbh
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Dihydrofolate reductase n=1 Tax=Rhodanobacter denitrificans RepID=M4NBN4_9GAMM rbh
SCNpilot_expt_500_p_scaffold_3070_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7452..7841
DNA (390bp) protein (130aa)
thiamine monophosphate synthase; K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-]
Thiamine monophosphate synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WIZ9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92595.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_500_p_scaffold_3070_11
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7895..8548)
DNA (654bp) protein (218aa)
Uncharacterized protein n=3 Tax=Azotobacter vinelandii RepID=M9Y2D6_AZOVI
hypothetical protein; K07491 putative transposase
Uncharacterized protein {ECO:0000313|EMBL:AGK21263.1}; TaxID=1283331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii CA6.;"
SCNpilot_expt_500_p_scaffold_3070_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8592..9206)
DNA (615bp) protein (205aa)
Dephospho-CoA kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WIZ8_9GAMM rbh
dephospho-CoA kinase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_3070_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9203..10060)
DNA (858bp) protein (286aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme {ECO:0000256|RuleBase:RU003794}; EC=2.1.1.- {ECO:0000256|RuleBase:RU003794};; EC=3.4.23.43 {ECO:0000256|RuleBase:RU003794};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
type 4 prepilin peptidase 1 (EC:3.4.23.43) rbh
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV21_9GAMM rbh
SCNpilot_expt_500_p_scaffold_3070_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10170..11405)
DNA (1236bp) protein (412aa)
Type II secretory pathway, component PulF n=1 Tax=Rhodanobacter denitrificans RepID=I4WIZ5_9GAMM rbh
type II secretory pathway, component PulF rbh
Type II secretory pathway, component PulF {ECO:0000313|EMBL:AGG88069.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_3070_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11547..13226)
DNA (1680bp) protein (560aa)
Type IV-A pilus assembly ATPase PilB n=1 Tax=Rhodanobacter denitrificans RepID=M4NBN9_9GAMM rbh
type IV-A pilus assembly ATPase PilB rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 15 items

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