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SCNpilot_expt_500_p_scaffold_1447

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1447_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..335)
DNA (333bp) protein (111aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFE9_9RHIZ
Putative sugar ABC transporter, permease protein {ECO:0000313|EMBL:AHK46709.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein
SCNpilot_expt_500_p_scaffold_1447_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(338..1237)
DNA (900bp) protein (300aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPS2_9RHIZ
ABC-type sugar transport system permease component {ECO:0000313|EMBL:EYR83017.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein
SCNpilot_expt_500_p_scaffold_1447_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1291..2541)
DNA (1251bp) protein (417aa)
Extracellular solute-binding protein family 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJZ5_9RHIZ
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR83018.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_500_p_scaffold_1447_4
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2676..3530
DNA (855bp) protein (285aa)
Transcriptional regulator, RpiR family n=2 Tax=Sinorhizobium medicae RepID=A6UGP6_SINMW
RpiR family transcriptional regulator
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:ABR62826.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_500_p_scaffold_1447_5
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3546..4226
DNA (681bp) protein (227aa)
N-(5'phosphoribosyl)anthranilate isomerase; K01817 phosphoribosylanthranilate isomerase [EC:5.3.1.24] rbh
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
hypothetical protein n=1 Tax=Sinorhizobium medicae RepID=UPI0002FF1CFA rbh
SCNpilot_expt_500_p_scaffold_1447_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4305..4658)
DNA (354bp) protein (118aa)
Rare lipoprotein A n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9SC18_9RHOB
Lipoprotein {ECO:0000313|EMBL:KKB07944.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
lipoprotein A domain-containing protein; K03642 rare lipoprotein A
SCNpilot_expt_500_p_scaffold_1447_7
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5084..5719)
DNA (636bp) protein (212aa)
Alkyl hydroperoxide reductase subunit C-like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDW4_PELHB rbh
Peroxidase {ECO:0000313|EMBL:KFL32323.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
alkyl hydroperoxide reductase rbh
SCNpilot_expt_500_p_scaffold_1447_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5887..6417)
DNA (531bp) protein (177aa)
Protein creA n=1 Tax=Rhizobium sp. RepID=L0NG52_RHISP
CREA protein {ECO:0000313|EMBL:KKB07943.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1447_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6496..7314)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000364CA32 rbh
Amino acid ABC transporter {ECO:0000313|EMBL:KKB07942.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein rbh
SCNpilot_expt_500_p_scaffold_1447_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7492..8280)
DNA (789bp) protein (263aa)
Amino acid ABC transporter, periplasmic amino acid-binding protein n=2 Tax=Pseudovibrio RepID=G8PQR4_PSEUV
Amino acid ABC transporter {ECO:0000313|EMBL:KKB07941.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
amino acid ABC transporter, periplasmic amino acid-binding protein
SCNpilot_expt_500_p_scaffold_1447_11
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8456..8824)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003820992
Uncharacterized protein {ECO:0000313|EMBL:KFL32326.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein; K09946 hypothetical protein
SCNpilot_expt_500_p_scaffold_1447_12
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8885..9187)
DNA (303bp) protein (101aa)
SelT/selW/selH selenoprotein domain-containing protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F457_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL32327.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein; K07401 selenoprotein W-related protein
SCNpilot_expt_500_p_scaffold_1447_13
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9184..9642)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00037EEFB4
Uncharacterized protein {ECO:0000313|EMBL:KFL32328.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cyclic nucleotide binding protein
SCNpilot_expt_500_p_scaffold_1447_14
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9715..10194)
DNA (480bp) protein (160aa)
peroxiredoxin (EC:1.11.1.15); K00432 glutathione peroxidase [EC:1.11.1.9]
glutathione peroxidase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA076
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_p_scaffold_1447_15
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10291..11541)
DNA (1251bp) protein (417aa)
D-amino acid dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01202}; EC=1.4.99.1 {ECO:0000256|HAMAP-Rule:MF_01202};; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
dadA1; D-amino acid dehydrogenase small subunit DadA (EC:1.4.99.1)
D-amino acid dehydrogenase small subunit n=1 Tax=Rhizobium giardinii RepID=UPI000375171E
SCNpilot_expt_500_p_scaffold_1447_16
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11711..12151
DNA (441bp) protein (147aa)
Leucine-responsive regulatory protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TH18_TISMK
Transcriptional regulator {ECO:0000313|EMBL:KKB76856.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
Leucine-responsive regulatory protein
SCNpilot_expt_500_p_scaffold_1447_17
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12169..13089)
DNA (921bp) protein (307aa)
Putative transcription regulator protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA67_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32292.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative transcription regulator protein
SCNpilot_expt_500_p_scaffold_1447_18
unknown

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13194..13349
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1447_19
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13405..13803
DNA (399bp) protein (133aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL32291.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_p_scaffold_1447_20
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13811..14734)
DNA (924bp) protein (308aa)
Extensin family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA70_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC31557.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
extensin
SCNpilot_expt_500_p_scaffold_1447_21
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14827..16632
DNA (1806bp) protein (602aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Elongation factor 4 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA71_PELHB rbh
translation elongation factor LepA; K03596 GTP-binding protein LepA rbh
SCNpilot_expt_500_p_scaffold_1447_22
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16701..17123)
DNA (423bp) protein (141aa)
Putative transmembrane iron-regulated protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA66_PELHB
Membrane protein {ECO:0000313|EMBL:KKC31884.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
putative transmembrane iron-regulated protein
Displaying 22 items

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