ggKbase home page

SCNpilot_expt_500_p_scaffold_440

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_440_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

422..847
DNA (426bp) protein (142aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB09427.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_p_scaffold_440_2
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

847..1530
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003749841
Uncharacterized protein {ECO:0000313|EMBL:KKB81000.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_440_3
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1527..2078)
DNA (552bp) protein (184aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL31751.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_p_scaffold_440_4
unknown

Not on your lists

comp(2082..2231)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_440_5
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2284..2538
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3HY99_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL31422.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_440_6
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2856..3086)
DNA (231bp) protein (77aa)
Two component transcriptional regulator, LuxR family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9L1_PELHB
Two component transcriptional regulator, LuxR family protein {ECO:0000313|EMBL:KFC68102.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
LuxR family transcriptional regulator
SCNpilot_expt_500_p_scaffold_440_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3729..4058)
DNA (330bp) protein (110aa)
Uncharacterized protein {ECO:0000313|EMBL:KDR87716.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
SCNpilot_expt_500_p_scaffold_440_8
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4045..4500)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HLS1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE99549.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_500_p_scaffold_440_9
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4497..5006)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3BYR7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB97321.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_440_10
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5096..5881)
DNA (786bp) protein (262aa)
N-acetylmuramoyl-L-alanine amidase (Modular protein) {ECO:0000313|EMBL:CCF19181.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CCF19181.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
N-acetylmuramoyl-L-alanine amidase; K01447 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
N-acetylmuramoyl-L-alanine amidase (Modular protein) n=1 Tax=Rhizobium sp. RepID=L0NEG3_RHISP rbh
SCNpilot_expt_500_p_scaffold_440_11
unknown

Not on your lists

comp(5990..6370)
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_440_12
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6702..7214)
DNA (513bp) protein (171aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL31488.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_p_scaffold_440_13
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7231..8196)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QC38_9DELT
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_expt_500_p_scaffold_440_14
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8196..8873)
DNA (678bp) protein (226aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JWD8_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ23051.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_500_p_scaffold_440_15
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8884..9330)
DNA (447bp) protein (149aa)
Uncharacterized protein {ECO:0000313|EMBL:ETR74713.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_expt_500_p_scaffold_440_16
unknown

Not on your lists

comp(9382..10842)
DNA (1461bp) protein (487aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_440_17
unknown

Not on your lists

comp(10848..11249)
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_440_18
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11253..12629)
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9W7Z8_METEP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY31917.1}; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
SCNpilot_expt_500_p_scaffold_440_19
EBPR siphovirus 2, Caudovirales, Viruses

Not on your lists

comp(12633..14186)
DNA (1554bp) protein (518aa)
Putative uncharacterized protein gp72 n=1 Tax=EBPR siphovirus 2 RepID=F8TV92_9CAUD
Putative uncharacterized protein gp72 {ECO:0000313|EMBL:AEI71088.1}; TaxID=1048521 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="EBPR siphovirus 2.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_440_20
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14186..18358)
DNA (4173bp) protein (1391aa)
Uncharacterized protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XS09_PARAH
Prophage tail length tape measure protein {ECO:0000313|EMBL:CDN52540.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_440_21
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18386..18616)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4P584_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ83256.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_440_22
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18688..19146)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036A9C4C
Uncharacterized protein {ECO:0000313|EMBL:ETR75069.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_440_23
unknown

Not on your lists

comp(19121..19336)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_440_24
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19342..20268)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000377FE7D rbh
Phage tail protein {ECO:0000313|EMBL:ETR75068.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_440_25
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20301..20711)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IIM9_METNO
Uncharacterized protein {ECO:0000313|EMBL:ETR75067.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_440_26
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20714..21313)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035F6869
Uncharacterized protein {ECO:0000313|EMBL:ETR75066.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_440_27
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21310..21636)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IIN1_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL59908.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_500_p_scaffold_440_28
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21633..22235)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZT30_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ETR75910.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_expt_500_p_scaffold_440_29
unknown

Not on your lists

comp(22238..22732)
DNA (495bp) protein (165aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_440_30

Not on your lists

comp(22787..23299)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029AB8E8
Uncharacterized protein {ECO:0000313|EMBL:KKL71488.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Displaying items 1-30 of 62 in total

View Taxonomy