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SCNpilot_expt_500_p_scaffold_2046

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_2046_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..436)
DNA (435bp) protein (145aa)
Trehalose/maltose import ATP-binding protein MalK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH37_9RHIZ
Carbohydrate ABC transporter ATP-binding protein, CUT1 family {ECO:0000313|EMBL:EYR81991.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter-like protein
SCNpilot_expt_500_p_scaffold_2046_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(436..2415)
DNA (1980bp) protein (660aa)
Binding-protein-dependent transport systems inner membrane component n=2 Tax=Sinorhizobium medicae RepID=A6UGJ2_SINMW rbh
ABC-type Fe3+ transport system periplasmic component {ECO:0000313|EMBL:EYR81990.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein rbh
SCNpilot_expt_500_p_scaffold_2046_3
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2634..3443
DNA (810bp) protein (270aa)
Nucleoside triphosphate hydrolase {ECO:0000313|EMBL:KKB09525.1}; EC=3.6.1.19 {ECO:0000313|EMBL:KKB09525.1};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
nucleoside triphosphate pyrophosphohydrolase MazG; K04765 ATP diphosphatase [EC:3.6.1.8] rbh
Nucleoside triphosphate pyrophosphohydrolase MazG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R907_PELHB rbh
SCNpilot_expt_500_p_scaffold_2046_4
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3500..4867)
DNA (1368bp) protein (456aa)
GTPase HflX n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R906_PELHB rbh
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
GTP-binding protein HflX; K03665 GTP-binding protein HflX rbh
SCNpilot_expt_500_p_scaffold_2046_5
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4876..5127)
DNA (252bp) protein (84aa)
RNA-binding protein Hfq n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R905_PELHB
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
RNA-binding protein Hfq; K03666 host factor-I protein
SCNpilot_expt_500_p_scaffold_2046_6
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5314..6696)
DNA (1383bp) protein (461aa)
Nitrogen assimilation regulatory protein NtrX n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R902_PELHB rbh
ATPase AAA {ECO:0000313|EMBL:KKC34774.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
nitrogen assimilation regulatory protein NtrX; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX rbh
SCNpilot_expt_500_p_scaffold_2046_7
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6697..9072)
DNA (2376bp) protein (792aa)
nitrogen regulation protein ntrY; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] rbh
Nitrogen regulation protein ntrY n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R901_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB78158.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_500_p_scaffold_2046_8
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9261..10709)
DNA (1449bp) protein (483aa)
Nitrogen assimilation regulatory protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R900_PELHB rbh
Chemotaxis protein CheY {ECO:0000313|EMBL:KKB78115.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
nitrogen assimilation regulatory protein; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG rbh
SCNpilot_expt_500_p_scaffold_2046_9
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10706..11845)
DNA (1140bp) protein (380aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
nitrogen regulation protein NR(II); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] rbh
Nitrogen regulation protein NR(II) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8Z9_PELHB rbh
SCNpilot_expt_500_p_scaffold_2046_10
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11842..12774)
DNA (933bp) protein (311aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
tRNA-dihydrouridine synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8Z8_PELHB rbh
tRNA dihydrouridine synthase B rbh
SCNpilot_expt_500_p_scaffold_2046_11
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13013..13348
DNA (336bp) protein (112aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
Bifunctional enzyme IspD/IspF n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=ISPDF_RHOPT
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
Displaying 11 items

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