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SCNpilot_expt_500_p_scaffold_2847

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_2847_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..822
DNA (822bp) protein (274aa)
ABC transporter, permease protein, HisMQ family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I0_PELHB rbh
ABC transporter permease {ECO:0000313|EMBL:KKB07323.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ABC transporter permease, HisMQ family; K02029 polar amino acid transport system permease protein rbh
SCNpilot_expt_500_p_scaffold_2847_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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822..1556
DNA (735bp) protein (245aa)
Histidine ABC transporter, permease protein HisM n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I1_PELHB rbh
Histidine ABC transporter permease {ECO:0000313|EMBL:KKB07324.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
histidine ABC transporter permease HisM; K02029 polar amino acid transport system permease protein rbh
SCNpilot_expt_500_p_scaffold_2847_3
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1582..1869
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI000364D90D
Uncharacterized protein {ECO:0000313|EMBL:KFL30424.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_2847_4
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1880..3019
DNA (1140bp) protein (380aa)
Succinylglutamate desuccinylase/aspartoacylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I2_PELHB rbh
Succinylglutamate desuccinylase {ECO:0000313|EMBL:KKB80259.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
succinylglutamate desuccinylase/aspartoacylase; K06987 rbh
SCNpilot_expt_500_p_scaffold_2847_5
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3122..3916)
DNA (795bp) protein (265aa)
Response regulator receiver protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WYA9_OCHA4 rbh
Two-component response regulator {ECO:0000313|EMBL:KKB80252.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
two-component response regulator rbh
SCNpilot_expt_500_p_scaffold_2847_6
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4070..4294
DNA (225bp) protein (75aa)
RNA polymerase n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003B35CA8
Uncharacterized protein {ECO:0000313|EMBL:KFC62523.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_500_p_scaffold_2847_7
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4301..4855
DNA (555bp) protein (185aa)
RNA polymerase sigma factor n=2 Tax=Bartonella tamiae RepID=J0R2G2_9RHIZ
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
rpoE; RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_p_scaffold_2847_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4897..5289)
DNA (393bp) protein (131aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB84288.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_500_p_scaffold_2847_9
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5463..6155
DNA (693bp) protein (231aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Rhizobium loti RepID=UPI00037F6CE0 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKC32139.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_2847_10
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6260..7648
DNA (1389bp) protein (463aa)
Sensor histidine kinase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1WUQ5_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB80247.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
sensor histidine kinase rbh
SCNpilot_expt_500_p_scaffold_2847_11
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7653..8573
DNA (921bp) protein (307aa)
Diacylglycerol kinase catalytic region n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F868_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB07314.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein; K07029
SCNpilot_expt_500_p_scaffold_2847_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8658..10172
DNA (1515bp) protein (505aa)
Signal transduction histidine kinase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F4N9_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB84229.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
signal transduction histidine kinase rbh
SCNpilot_expt_500_p_scaffold_2847_13
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10198..10629)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI00039A1EE7
Uncharacterized protein {ECO:0000313|EMBL:KFC62528.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_500_p_scaffold_2847_14
unknown

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comp(10632..10736)
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 14 items

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