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SCNpilot_expt_500_p_scaffold_3721

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_3721_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..253
DNA (252bp) protein (84aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
inosine-5'-monophosphate dehydrogenase; K00088 IMP dehydrogenase [EC:1.1.1.205]
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFW0_PELHB
SCNpilot_expt_500_p_scaffold_3721_2
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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357..776
DNA (420bp) protein (140aa)
Scaffold38, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30026.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
SCNpilot_expt_500_p_scaffold_3721_3
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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913..1407
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036E1736
Uncharacterized protein {ECO:0000313|EMBL:KKB09154.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cytochrome B561
SCNpilot_expt_500_p_scaffold_3721_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1697..2131
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFW1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10252.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_3721_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2135..3421
DNA (1287bp) protein (429aa)
sun family protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] rbh
Sun family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFW3_PELHB rbh
MFS transporter {ECO:0000313|EMBL:KKB09155.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_p_scaffold_3721_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3513..4004
DNA (492bp) protein (164aa)
Tryptophan-rich sensory protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFW4_PELHB
CrtK/TspO family sensor protein {ECO:0000313|EMBL:KKB09156.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
tryptophan-rich sensory protein; K07185 tryptophan-rich sensory protein
SCNpilot_expt_500_p_scaffold_3721_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4061..5632
DNA (1572bp) protein (524aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
GMP synthase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] rbh
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IMJ8_9RHIZ rbh
SCNpilot_expt_500_p_scaffold_3721_8
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5690..6079)
DNA (390bp) protein (130aa)
Putative translation initiation inhibitor n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MCW1_9RHIZ
Endoribonuclease L-PSP {ECO:0000313|EMBL:KFL31182.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
endoribonuclease L-PSP
SCNpilot_expt_500_p_scaffold_3721_9
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6144..6887)
DNA (744bp) protein (248aa)
Transcriptional regulator, GntR family n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U3L3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL31183.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transcriptional regulator, GntR family
SCNpilot_expt_500_p_scaffold_3721_10
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6955..8121)
DNA (1167bp) protein (389aa)
class I and II aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1] rbh
Aspartate aminotransferase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1A6_9RHOB rbh
Aspartate aminotransferase {ECO:0000313|EMBL:KFL31184.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_p_scaffold_3721_11
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8165..8923)
DNA (759bp) protein (253aa)
Putative oxidoreductase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U6I4_9RHIZ
Oxidoreductase {ECO:0000313|EMBL:KFL31185.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
oxidoreductase
Displaying 11 items

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