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SCNpilot_expt_500_p_scaffold_2589

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_2589_1
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..288)
DNA (288bp) protein (96aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
Autoinducer synthesis protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DD58_9RHIZ
putative autoinducer synthesis protein
SCNpilot_expt_500_p_scaffold_2589_2
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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627..1838
DNA (1212bp) protein (404aa)
chromosome partitioning protein ParA n=1 Tax=Methylocystis parvus RepID=UPI0002DA1F73 rbh
plasmid partitioning protein RepA rbh
Plasmid partitioning protein RepA {ECO:0000313|EMBL:ACL62763.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_500_p_scaffold_2589_3
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1919..2899
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI00036CB35F rbh
plasmid partitioning protein RepB; K03497 chromosome partitioning protein, ParB family rbh
Plasmid partitioning protein RepB {ECO:0000313|EMBL:ACL62764.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_500_p_scaffold_2589_4
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3059..4402
DNA (1344bp) protein (448aa)
UPI0003CE609C related cluster n=1 Tax=unknown RepID=UPI0003CE609C rbh
Replication initiation protein RepC {ECO:0000313|EMBL:KFL27560.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
replication initiation protein RepC rbh
SCNpilot_expt_500_p_scaffold_2589_5
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4399..4722
DNA (324bp) protein (108aa)
Putative transcriptional regulator with C-terminal CBS domain-containing protein n=1 Tax=Rhizobium sp. CF080 RepID=J2ID71_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:KKC32301.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_2589_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4914..5168
DNA (255bp) protein (85aa)
plasmid stabilization protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000375786C
hypothetical protein
Hypothetical conserved protein {ECO:0000313|EMBL:ACE94449.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_500_p_scaffold_2589_7
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5366..5608
DNA (243bp) protein (81aa)
Transcriptional regulator n=4 Tax=Mesorhizobium RepID=V7EXG6_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:KKC32299.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_2589_8
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5608..6000
DNA (393bp) protein (131aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
UPI0003CF8A31 related cluster n=1 Tax=unknown RepID=UPI0003CF8A31
hypothetical protein
SCNpilot_expt_500_p_scaffold_2589_9
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6040..6684)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AH4_MESSB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABG65601.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_500_p_scaffold_2589_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6725..7033)
DNA (309bp) protein (103aa)
Integrase/recombinase xerD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWX1_9RHIZ
integrase family protein
Integrase/recombinase xerD {ECO:0000313|EMBL:EYR81582.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_500_p_scaffold_2589_11
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7225..7602
DNA (378bp) protein (126aa)
UPI0003CEFCB8 related cluster n=1 Tax=unknown RepID=UPI0003CEFCB8
Uncharacterized protein {ECO:0000313|EMBL:ESW80723.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_2589_12
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7602..8282
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FAI5_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ESX60227.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_2589_13
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8292..9536)
DNA (1245bp) protein (415aa)
Phage integrase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MP1_MESSB rbh
phage integrase rbh
Phage integrase {ECO:0000313|EMBL:ABG61328.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_500_p_scaffold_2589_14
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9586..10545
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037D8429 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKC32296.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_2589_15
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10554..11258
DNA (705bp) protein (235aa)
Transcriptional regulator n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FAH2_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:KKC32295.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
transcriptional regulator
SCNpilot_expt_500_p_scaffold_2589_16
unknown

Not on your lists

comp(11269..11376)
DNA (108bp) protein (36aa)

This feature has no annotations

Displaying 16 items

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