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SCNpilot_expt_500_p_scaffold_2489

Search features with annotation key words

Displaying 15 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_2489_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..1889)
DNA (1887bp) protein (629aa)
DNA-directed DNA polymerase III PolC (EC:2.7.7.7)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Error-prone DNA polymerase n=1 Tax=Rhodanobacter denitrificans RepID=M4NH88_9GAMM
SCNpilot_expt_500_p_scaffold_2489_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1922..2653
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NE12_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG88995.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_2489_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2670..4055)
DNA (1386bp) protein (462aa)
Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Rhodanobacter denitrificans RepID=M4NMV0_9GAMM rbh
nucleotidyltransferase/DNA polymerase involved in DNA repair rbh
Nucleotidyltransferase/DNA polymerase involved in DNA repair {ECO:0000313|EMBL:AGG88996.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_2489_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4015..4677)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NG04_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88997.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_2489_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4687..5334)
DNA (648bp) protein (216aa)
SOS response transcriptional repressor, RecA-mediated autopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NH92_9GAMM
SOS response transcriptional repressor, RecA-mediated autopeptidase
SOS response transcriptional repressor, RecA-mediated autopeptidase {ECO:0000313|EMBL:AGG88998.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_2489_6
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5476..6450)
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D892AC rbh
Uncharacterized protein {ECO:0000313|EMBL:AIF46372.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_2489_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6574..7176)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NE14_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG89000.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_2489_8

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comp(7194..7733)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QBA2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI04478.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SCNpilot_expt_500_p_scaffold_2489_9
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7810..8175)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Heidelberg str. SARA33 RepID=U1J4T8_SALET
Uncharacterized protein {ECO:0000313|EMBL:KEX94896.1}; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobacter siderocapsulatus).;"
SCNpilot_expt_500_p_scaffold_2489_10
unknown

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comp(8172..8405)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_2489_11
unknown

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comp(8475..8915)
DNA (441bp) protein (147aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_2489_12
unknown

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comp(8915..9871)
DNA (957bp) protein (319aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_2489_13
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9859..10578)
DNA (720bp) protein (240aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=867903 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
thymidylate kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9]
Thymidylate kinase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QDH4_9FIRM
SCNpilot_expt_500_p_scaffold_2489_14
unknown

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comp(10594..10761)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_2489_15
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10955..11647)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa S54485 RepID=U9P6L4_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:KCB36890.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
Displaying 15 items

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