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SCNpilot_expt_500_p_scaffold_6536

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_6536_1
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..793
DNA (792bp) protein (264aa)
4-aminobutyrate aminotransferase; K07250 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase [EC:2.6.1.19 2.6.1.22] id=12552003 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
4-aminobutyrate aminotransferase; K07250 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase [EC:2.6.1.19 2.6.1.22]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_p_scaffold_6536_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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947..2023
DNA (1077bp) protein (359aa)
spermidine/putrescine ABC transporter ATPase; K02052 putative spermidine/putrescine transport system ATP-binding protein id=12552002 bin=BDI species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
spermidine/putrescine ABC transporter ATPase; K02052 putative spermidine/putrescine transport system ATP-binding protein rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_p_scaffold_6536_3
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2059..3102
DNA (1044bp) protein (348aa)
extracellular solute-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein id=12552001 bin=BDI species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
extracellular solute-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_p_scaffold_6536_4
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3125..4402
DNA (1278bp) protein (426aa)
binding-protein-dependent transport systems inner membrane component; K02054 putative spermidine/putrescine transport system permease protein id=12552000 bin=BDI species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
binding-protein-dependent transport systems inner membrane component; K02054 putative spermidine/putrescine transport system permease protein rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_p_scaffold_6536_5
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4583..5398
DNA (816bp) protein (272aa)
Fis family transcriptional regulator; K02053 putative spermidine/putrescine transport system permease protein id=12551999 bin=BDI species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
Fis family transcriptional regulator; K02053 putative spermidine/putrescine transport system permease protein rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_p_scaffold_6536_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5478..5771
DNA (294bp) protein (98aa)
Cupin n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1I067_PSEUO
cupin 2 protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_p_scaffold_6536_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5884..6036
DNA (153bp) protein (51aa)
gabD; succinate-semialdehyde dehydrogenase (NADP+) GabD (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
succinate-semialdehyde dehydrogenase id=12551997 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying 7 items

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