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SCNpilot_expt_500_p_scaffold_4637

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_4637_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(37..1005)
DNA (969bp) protein (323aa)
Diguanylate cyclase (GGDEF domain) n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q219A8_RHOPB
diguanylate cyclase
Diguanylate cyclase (GGDEF domain) {ECO:0000313|EMBL:ABD87028.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_500_p_scaffold_4637_2
Candidatus Symbiobacter mobilis, Candidatus Symbiobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1008..1766)
DNA (759bp) protein (253aa)
Cobalamin binding-like protein n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5NB25_9BURK
cobalamin binding-like protein
Cobalamin binding-like protein {ECO:0000313|EMBL:AGX88622.1}; TaxID=946483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Candidatus Symbiobacter mobilis CR.;"
SCNpilot_expt_500_p_scaffold_4637_3
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1883..2377
DNA (495bp) protein (165aa)
Flavodoxin/nitric oxide synthase n=2 Tax=Ralstonia pickettii RepID=B2UIB6_RALPJ
Flavodoxin {ECO:0000313|EMBL:AJW47253.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
flavodoxin/nitric oxide synthase
SCNpilot_expt_500_p_scaffold_4637_4
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2379..3425)
DNA (1047bp) protein (349aa)
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Acidovorax sp. CF316 RepID=J0KLY6_9BURK
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:EJE52223.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
araC family transcriptional regulator
SCNpilot_expt_500_p_scaffold_4637_5
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3662..4567)
DNA (906bp) protein (302aa)
Transcriptional regulator n=1 Tax=Acidovorax sp. CF316 RepID=J1EN97_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJE53736.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
transcriptional regulator
SCNpilot_expt_500_p_scaffold_4637_6
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4654..5619
DNA (966bp) protein (322aa)
permease n=1 Tax=Acidovorax radicis RepID=UPI0002377078
Multidrug DMT transporter permease {ECO:0000313|EMBL:KJA11393.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
permease
SCNpilot_expt_500_p_scaffold_4637_7
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5752..6660)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI0003684456
D-malate degradation protein R {ECO:0000313|EMBL:EXI89849.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_4637_8
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6783..7415
DNA (633bp) protein (211aa)
NADP oxidoreductase coenzyme F420-dependent n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y183_LEPCP
coenzyme F420-dependent NADP oxidoreductase; K06988
NADP oxidoreductase coenzyme F420-dependent {ECO:0000313|EMBL:ACB33060.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_500_p_scaffold_4637_9
Marinobacter adhaerens, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7459..7848
DNA (390bp) protein (130aa)
DoxD-like family protein n=1 Tax=Marinobacter adhaerens (strain HP15) RepID=E4PEZ4_MARAH
DoxD-like family protein; K15977 putative oxidoreductase
DoxD-like family protein {ECO:0000313|EMBL:ADP96699.1}; TaxID=225937 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter adhaerens (strain HP15).;"
SCNpilot_expt_500_p_scaffold_4637_10
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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7848..8651
DNA (804bp) protein (268aa)
LigB family dioxygenase {ECO:0000313|EMBL:EXI89847.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
Extradiol ring-cleavage dioxygenase class III protein subunit B id=1274577 bin=GWE1_Burkholderiales_65_30 species=Thauera phenylacetica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
extradiol ring-cleavage dioxygenase class III protein subunit B rbh
SCNpilot_expt_500_p_scaffold_4637_11
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8667..9317
DNA (651bp) protein (217aa)
Phospholipase/Carboxylesterase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y184_LEPCP
phospholipase/carboxylesterase; K06999 phospholipase/carboxylesterase
Phospholipase/Carboxylesterase {ECO:0000313|EMBL:ACB33061.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_500_p_scaffold_4637_12
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9314..9766
DNA (453bp) protein (151aa)
hypothetical protein
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_500_p_scaffold_4637_13
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9931..10845)
DNA (915bp) protein (305aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax sp. NO-1 RepID=H0BVY6_9BURK
LysR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_500_p_scaffold_4637_14
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10954..12465
DNA (1512bp) protein (504aa)
methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27); K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C0J7_9BURK
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_expt_500_p_scaffold_4637_15
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12703..12801
DNA (99bp) protein (33aa)
acyl-CoA dehydrogenase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395DF61
acyl-CoA dehydrogenase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
Displaying 15 items

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