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SCNpilot_expt_500_p_scaffold_3928

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_3928_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1628
DNA (1626bp) protein (542aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Afipia sp. 1NLS2 RepID=D6V763_9BRAD rbh
Bacteriophytochrome cph2 {ECO:0000313|EMBL:CEG09452.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
SCNpilot_expt_500_p_scaffold_3928_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1828..2661
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8Q5_9BRAD rbh
Phosphonate utilization associated putative membrane protein {ECO:0000313|EMBL:CEG09062.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_3928_3
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2823..4118)
DNA (1296bp) protein (432aa)
Major facilitator superfamily MFS_1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V946_9BRAD rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EFI50684.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
oxlT; oxalate:formate antiporter OxlT rbh
SCNpilot_expt_500_p_scaffold_3928_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4459..5142
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NEE2_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS29002.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
GntR family transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_3928_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5197..6603)
DNA (1407bp) protein (469aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] rbh
Amidase n=2 Tax=Oligotropha carboxidovorans RepID=B6JJH8_OLICO rbh
Amidase {ECO:0000313|EMBL:AEI05387.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_p_scaffold_3928_6
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6718..7416)
DNA (699bp) protein (233aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BKL3_OLICM rbh
cyclase superfamily rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI05386.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_p_scaffold_3928_7
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7434..8186)
DNA (753bp) protein (251aa)
ABC transporter, putative branched-chain amino acid transport ATP-binding protein LivF n=2 Tax=Oligotropha carboxidovorans RepID=B6JJI0_OLICO rbh
livF2; ABC transporter, putative branched-chain amino acid transport ATP-binding protein LivF; K01996 branched-chain amino acid transport system ATP-binding protein rbh
ABC transporter, putative branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:AEI05385.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_p_scaffold_3928_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8189..8605)
DNA (417bp) protein (139aa)
ABC branched chain amino acid family transporter n=2 Tax=Oligotropha carboxidovorans RepID=B6JJI1_OLICO
livG2; ABC transporter, branched-chain amino acid transport ATP-binding protein LivG; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein
ABC transporter, branched-chain amino acid transport ATP-binding protein LivG {ECO:0000313|EMBL:AEI05384.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Displaying 8 items

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