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SCNpilot_expt_500_p_scaffold_2763

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_2763_1
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..477)
DNA (477bp) protein (159aa)
Regulatory proteins, IclR n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U460_9PROT
IclR family transcriptional regulator
Tax=BJP_IG2103_Dechloromonas_63_51
SCNpilot_expt_500_p_scaffold_2763_2
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

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comp(509..751)
DNA (243bp) protein (81aa)
preprotein translocase subunit TatC n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI00035C15AB
putative regulator, SirA-like domain
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
SCNpilot_expt_500_p_scaffold_2763_3
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(846..1379)
DNA (534bp) protein (178aa)
ADP-ribose pyrophosphatase n=1 Tax=Burkholderia thailandensis RepID=UPI00016A5CB1
putative phosphatase
NUDIX hydrolase {ECO:0000313|EMBL:EDS99602.1}; TaxID=396596 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
SCNpilot_expt_500_p_scaffold_2763_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1400..1927)
DNA (528bp) protein (176aa)
Chromate transporter subunit A n=1 Tax=Azoarcus sp. KH32C RepID=H0PZY3_9RHOO
chrA; chromate transporter subunit A
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
SCNpilot_expt_500_p_scaffold_2763_5
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1929..2504)
DNA (576bp) protein (192aa)
CHR transporter n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SHX1_METPP
chrA; CHR transporter; K07240 chromate transporter
CHR transporter {ECO:0000313|EMBL:ABM95160.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCNpilot_expt_500_p_scaffold_2763_6
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2485..3684)
DNA (1200bp) protein (400aa)
Transporter, major facilitator family protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X7Y1_9BURK rbh
inner membrane efflux protein rbh
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_expt_500_p_scaffold_2763_7
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3759..6377)
DNA (2619bp) protein (873aa)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] rbh
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=271848 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 /; CIP 106301).;"
alanyl-tRNA synthetase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000367B7B8 rbh
SCNpilot_expt_500_p_scaffold_2763_8
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6456..8117
DNA (1662bp) protein (554aa)
multi-sensor signal transduction histidine kinase; K11711 two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3]
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00036B6EEC
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_expt_500_p_scaffold_2763_9
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8114..8782
DNA (669bp) protein (223aa)
Two component transcriptional regulator, LuxR family n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TZC4_9PROT
two component LuxR family transcriptional regulator; K11712 two-component system, LuxR family, response regulator DctR
Two component transcriptional regulatory protein, LuxR family {ECO:0000313|EMBL:CDK99374.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
SCNpilot_expt_500_p_scaffold_2763_10
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8841..9893
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00036828AE rbh
Tripartite tricarboxylate transporter family receptor {ECO:0000313|EMBL:KCB45825.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
bug; extra-cytoplasmic solute receptor protein rbh
SCNpilot_expt_500_p_scaffold_2763_11
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10104..10565
DNA (462bp) protein (154aa)
Uncharacterized protein n=36 Tax=Bordetella RepID=F4LAW2_BORPC
hypothetical protein
Tripartite tricarboxylate transporter TctB family protein {ECO:0000313|EMBL:KCV60453.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
SCNpilot_expt_500_p_scaffold_2763_12
Proteobacteria bacterium CAG:139, Proteobacteria, Bacteria

Not on your lists

10584..10937
DNA (354bp) protein (118aa)
Membrane protein n=1 Tax=Proteobacteria bacterium CAG:139 RepID=R6AG91_9PROT
Membrane protein {ECO:0000313|EMBL:CDA45531.1}; TaxID=1262986 species="Bacteria; Proteobacteria; environmental samples.;" source="Proteobacteria bacterium CAG:139.;"
hypothetical protein
Displaying 12 items

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