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SCNpilot_expt_500_p_scaffold_3947

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_3947_1
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..797)
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000347B604
Transporter {ECO:0000313|EMBL:AJE99286.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
Lipocalin-related protein and Bos/Can/Equ allergen
SCNpilot_expt_500_p_scaffold_3947_2

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comp(794..1480)
DNA (687bp) protein (229aa)
Queuosine biosynthesis protein queC {ECO:0000313|EMBL:CBH95778.1}; EC=3.5.-.- {ECO:0000313|EMBL:CBH95778.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
queC; 7-cyano-7-deazaguanine synthase (EC:6.3.-.-); K06920 queuosine biosynthesis protein QueC rbh
Queuosine biosynthesis protein queC n=1 Tax=mine drainage metagenome RepID=E6PLH7_9ZZZZ rbh
SCNpilot_expt_500_p_scaffold_3947_3
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1477..2256)
DNA (780bp) protein (260aa)
Tol-pal system protein YbgF n=1 Tax=Herbaspirillum sp. CF444 RepID=J3DJN6_9BURK
Tol-pal system protein YbgF {ECO:0000313|EMBL:EJL93356.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_3947_4
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2253..2807)
DNA (555bp) protein (185aa)
membrane protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00030B1128
OmpA/MotB {ECO:0000313|EMBL:KIF80963.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
pal; peptidoglycan-associated outer membrane lipoprotein; K03640 peptidoglycan-associated lipoprotein
SCNpilot_expt_500_p_scaffold_3947_5
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2866..4128)
DNA (1263bp) protein (421aa)
Protein TolB n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RUG5_9BURK rbh
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
Tol-Pal system beta propeller repeat-containing protein TolB; K03641 TolB protein
SCNpilot_expt_500_p_scaffold_3947_6
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4172..5188)
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00036EE849
Protein TolA {ECO:0000313|EMBL:EFV95949.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
protein TolA; K03646 colicin import membrane protein
SCNpilot_expt_500_p_scaffold_3947_7
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5217..5660)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RUG7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV95950.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
biopolymer transport protein exbd/tolr; K03560 biopolymer transport protein TolR
SCNpilot_expt_500_p_scaffold_3947_8
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5662..6333)
DNA (672bp) protein (224aa)
protein tolQ n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A33E8 rbh
MotA/TolQ/ExbB proton channel family protein {ECO:0000313|EMBL:CEJ96146.1}; Protein tolQ {ECO:0000313|EMBL:KDR44667.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
tolQ; protein TolQ rbh
SCNpilot_expt_500_p_scaffold_3947_9
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6341..6877)
DNA (537bp) protein (179aa)
tol-pal system-associated acyl-CoA thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Tol-pal system-associated acyl-CoA thioesterase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QF87_AZOSU
Tol-pal system-associated acyl-CoA thioesterase {ECO:0000313|EMBL:AEV24897.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_500_p_scaffold_3947_10
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6932..8020)
DNA (1089bp) protein (363aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativorans.;"
ruvB; Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] rbh
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X5T4_9BURK rbh
SCNpilot_expt_500_p_scaffold_3947_11
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8017..8568)
DNA (552bp) protein (184aa)
Holliday junction DNA helicase, RuvA subunit; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QF89_AZOSU
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
Displaying 11 items

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