ggKbase home page
Advanced Search
Search Help

SCNPILOT_EXPT_1000_BF_Burkholderiales_68_66

SCNPILOT_EXPT_500_P_Burkholderiales_70_8
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy: Burkholderiales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 8.09 Longest contig: 18.20 Kbp Bin length: 3.44 Mbp GC content: 69.82 %
Contigs count: 1169 Features count: 4201 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 29 / 55 MC: 3 BSCG 30 / 51 MC: 3 ASCG 9 / 38 MC: 2
Displaying items 951-1000 of 1169 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_37461
Species: Burkholderia oklahomensis (50%)
2 1451 bp 71.67 10.68 81.25
SCNpilot_expt_500_p_scaffold_35677
Species: Massilia sp. JS1662 (50%)
2 1516 bp 68.14 11.54 93.60
SCNpilot_expt_500_p_scaffold_50668
Species: Burkholderia sp. BT03 (50%)
2 1112 bp 71.58 9.67 94.69
SCNpilot_expt_500_p_scaffold_24438
Species: Cupriavidus basilensis (50%)
2 2145 bp 71.00 7.34 100.00
SCNpilot_expt_500_p_scaffold_43686
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated (50%)
2 1262 bp 65.77 9.51 83.91
SCNpilot_expt_500_p_scaffold_49134
Species: RBG_16_Betaproteobacteria_64_18_curated (50%)
2 1141 bp 71.08 10.08 92.81
SCNpilot_expt_500_p_scaffold_30113
Species: Ralstonia solanacearum (100%)
2 1773 bp 67.96 6.49 93.57
SCNpilot_expt_500_p_scaffold_17634
Species: Acidovorax avenae (100%)
2 2854 bp 67.20 8.32 98.07
SCNpilot_expt_500_p_scaffold_31059
Species: R_Burkholderiales_67_14 (50%)
2 1726 bp 72.48 4.92 87.95
SCNpilot_expt_500_p_scaffold_37724
Species: Lautropia mirabilis (100%)
2 1441 bp 72.59 8.33 92.02
SCNpilot_expt_500_p_scaffold_36182
Species: Lautropia mirabilis (50%)
2 1497 bp 69.54 7.52 89.98
SCNpilot_expt_500_p_scaffold_46205
Species: Acidovorax sp. MR-S7 (50%)
2 1203 bp 66.58 10.18 60.35
SCNpilot_expt_500_p_scaffold_36696
Species: Rhodocyclaceae bacterium PG1-Ca6 (50%)
2 2337 bp 72.02 8.02 61.10
SCNpilot_expt_500_p_scaffold_23320
Species: Lautropia mirabilis (50%)
2 2238 bp 72.30 9.83 96.25
SCNpilot_expt_500_p_scaffold_42049
Species: Burkholderia sp. MSHR3999 (50%)
2 1305 bp 72.72 8.43 99.77
SCNpilot_expt_500_p_scaffold_39467
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated (50%)
2 1382 bp 76.85 8.68 100.07
SCNpilot_expt_500_p_scaffold_32757
Species: Pandoraea sputorum (50%)
2 1642 bp 66.99 4.57 78.01
SCNpilot_expt_500_p_scaffold_42820
Species: R_Betaproteobacteria_65_24 (50%)
2 1285 bp 72.68 9.73 83.35
SCNpilot_expt_500_p_scaffold_54196
Species: Achromobacter sp. RTa (50%)
2 1050 bp 69.05 7.62 93.14
SCNpilot_expt_500_p_scaffold_39470
Species: Methyloversatilis universalis (50%)
2 1381 bp 68.50 6.52 99.06
SCNpilot_expt_500_p_scaffold_47006
Species: Herbaspirillum sp. CF444 (50%)
2 1185 bp 69.45 4.64 96.96
SCNpilot_expt_500_p_scaffold_24200
Species: Sulfuritalea hydrogenivorans (50%)
2 2164 bp 72.04 8.78 99.54
SCNpilot_expt_500_p_scaffold_47519
Species: Variovorax sp. CF313 (50%)
2 1174 bp 73.51 7.67 90.72
SCNpilot_expt_500_p_scaffold_29401
Species: R_Curvibacter_63_18 (50%)
2 1812 bp 68.05 12.14 99.34
SCNpilot_expt_500_p_scaffold_42058
Species: RLO_Betaproteobacteria_68_20 (50%)
2 1305 bp 66.13 8.05 97.24
SCNpilot_expt_500_p_scaffold_20085
Species: R_Betaproteobacteria_65_24 (100%)
2 3101 bp 68.43 8.30 99.74
SCNpilot_expt_500_p_scaffold_56108
Species: Methylibium sp. T29-B (50%)
2 1020 bp 71.86 7.60 85.00
SCNpilot_expt_500_p_scaffold_20855
Species: Comamonas testosteroni (50%)
2 2470 bp 71.82 6.98 83.08
SCNpilot_expt_500_p_scaffold_28567
Species: CG_Rhodocyc_01 (50%)
2 1860 bp 71.13 5.51 100.16
SCNpilot_expt_500_p_scaffold_33799
Species: Nitrosomonas europaea (50%)
2 1594 bp 57.78 6.90 66.62
SCNpilot_expt_500_p_scaffold_20602
Species: Hylemonella gracilis (50%)
2 2497 bp 71.57 5.91 98.28
SCNpilot_expt_500_p_scaffold_33802
Species: Lautropia mirabilis (50%)
2 1594 bp 72.65 7.37 95.04
SCNpilot_expt_500_p_scaffold_28315
Species: Leptothrix cholodnii (50%)
2 1874 bp 72.52 10.27 89.33
SCNpilot_expt_500_p_scaffold_34110
Species: Burkholderia sp. 2002721687 (50%)
2 1580 bp 74.49 5.70 96.84
SCNpilot_expt_500_p_scaffold_25390
Species: Leptothrix cholodnii (50%)
2 2072 bp 66.41 7.96 95.70
SCNpilot_expt_500_p_scaffold_47789
Species: BJP_IG2103_Dechloromonas_60_92 (50%)
2 1168 bp 74.83 9.20 97.35
SCNpilot_expt_500_p_scaffold_27072
Species: Nitrosospira lacus (50%)
2 1953 bp 70.30 5.89 99.08
SCNpilot_expt_500_p_scaffold_33808
Species: CG_Rhodof_02 (50%)
2 1594 bp 71.14 10.98 91.66
SCNpilot_expt_500_p_scaffold_29929
Species: R_Burkholderiales_69_20 (100%)
2 1782 bp 70.43 7.72 86.36
SCNpilot_expt_500_p_scaffold_37754
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated (50%)
2 1440 bp 70.63 5.73 98.54
SCNpilot_expt_500_p_scaffold_53034
Species: Burkholderia sp. BT03 (50%)
2 1069 bp 72.40 5.14 94.86
SCNpilot_expt_500_p_scaffold_27845
Species: Methylibium sp. T29-B (50%)
2 1903 bp 71.57 8.15 89.70
SCNpilot_expt_500_p_scaffold_49940
Species: RBG_16_Betaproteobacteria_64_18_curated (50%)
2 1126 bp 71.31 9.33 92.45
SCNpilot_expt_500_p_scaffold_50196
Species: BJP_08E140C01_10KDA_Burkholderiales_65_51 (50%)
2 1121 bp 72.61 7.81 62.36
SCNpilot_expt_500_p_scaffold_55055
Species: Lautropia mirabilis (50%)
2 1036 bp 69.98 7.00 69.79
SCNpilot_expt_500_p_scaffold_36473
Species: Candidatus Accumulibacter sp. SK-12 (50%)
2 1486 bp 69.85 4.04 90.04
SCNpilot_expt_500_p_scaffold_40424
Species: R_Burkholderiales_57_36 (100%)
2 1352 bp 72.49 11.83 100.30
SCNpilot_expt_500_p_scaffold_54224
Species: Achromobacter piechaudii (50%)
2 1050 bp 67.43 10.00 80.29
SCNpilot_expt_500_p_scaffold_27595
Species: Polaromonas sp. JS666 (50%)
2 1920 bp 72.60 6.90 96.88
SCNpilot_expt_500_p_scaffold_27851
Species: Lautropia mirabilis (50%)
2 1903 bp 71.10 8.93 99.32
Displaying items 951-1000 of 1169 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.