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SCNPILOT_EXPT_1000_BF_Burkholderiales_68_66

SCNPILOT_EXPT_500_P_Burkholderiales_70_8
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy: Burkholderiales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 8.09 Longest contig: 18.20 Kbp Bin length: 3.44 Mbp GC content: 69.82 %
Contigs count: 1169 Features count: 4201 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 29 / 55 MC: 3 BSCG 30 / 51 MC: 3 ASCG 9 / 38 MC: 2
Displaying items 951-1000 of 1169 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_26601
Species: Rubrivivax gelatinosus (66.67%)
3 1985 bp 71.59 8.06 98.99
SCNpilot_expt_500_p_scaffold_31540
Species: Burkholderia fungorum (50%)
2 1700 bp 69.00 6.62 99.00
SCNpilot_expt_500_p_scaffold_19202
Species: Hydrogenophaga sp. PBC (100%)
2 2654 bp 59.50 7.54 99.02
SCNpilot_expt_500_p_scaffold_3750
Order: Burkholderiales (81.82%)
11 8882 bp 69.40 12.10 99.03
SCNpilot_expt_500_p_scaffold_40256
Species: R_Burkholderiales_69_20 (50%)
2 1357 bp 66.10 10.32 99.04
SCNpilot_expt_500_p_scaffold_26602
Order: Burkholderiales (50%)
4 1984 bp 70.87 8.69 99.04
SCNpilot_expt_500_p_scaffold_39470
Species: Methyloversatilis universalis (50%)
2 1381 bp 68.50 6.52 99.06
SCNpilot_expt_500_p_scaffold_9313
Phylum: Proteobacteria (50%)
6 4682 bp 71.59 5.66 99.06
SCNpilot_expt_500_p_scaffold_25848
Species: Medicago truncatula (50%)
2 2038 bp 62.22 8.34 99.07
SCNpilot_expt_500_p_scaffold_12799
Domain: Bacteria (83.33%)
6 3688 bp 67.11 6.98 99.08
SCNpilot_expt_500_p_scaffold_27072
Species: Nitrosospira lacus (50%)
2 1953 bp 70.30 5.89 99.08
SCNpilot_expt_500_p_scaffold_15332
Species: Chromobacterium violaceum (50%)
4 3194 bp 70.79 7.20 99.09
SCNpilot_expt_500_p_scaffold_34772
Species: R_Betaproteobacteria_63_19 (100%)
2 1553 bp 66.07 9.34 99.10
SCNpilot_expt_500_p_scaffold_22048
Order: Burkholderiales (75%)
4 2352 bp 66.37 8.82 99.11
SCNpilot_expt_500_p_scaffold_33983
Species: BJP_08E140C01_Burkholderiales_65_30 (50%)
2 1586 bp 71.19 7.57 99.12
SCNpilot_expt_500_p_scaffold_24156
Species: Lautropia mirabilis (100%)
1 2167 bp 69.68 7.96 99.12
SCNpilot_expt_500_p_scaffold_39153
Species: Dechloromonas aromatica (50%)
2 1392 bp 69.04 10.42 99.14
SCNpilot_expt_500_p_scaffold_25105
Order: Burkholderiales (66.67%)
3 2091 bp 72.07 8.01 99.14
SCNpilot_expt_500_p_scaffold_25029
Class: Betaproteobacteria (75%)
4 2097 bp 64.62 6.80 99.14
SCNpilot_expt_500_p_scaffold_10076
Class: Betaproteobacteria (66.67%)
3 4430 bp 70.88 6.66 99.14
SCNpilot_expt_500_p_scaffold_47812
Class: Betaproteobacteria (66.67%)
3 1168 bp 71.66 10.70 99.14
SCNpilot_expt_500_p_scaffold_19847
Genus: Ralstonia (50%)
4 2581 bp 73.58 8.52 99.15
SCNpilot_expt_500_p_scaffold_18198
Phylum: Proteobacteria (57.14%)
7 5515 bp 69.77 8.88 99.17
SCNpilot_expt_500_p_scaffold_15064
Species: RLO_Betaproteobacteria_68_20 (50%)
2 3240 bp 70.09 6.71 99.17
SCNpilot_expt_500_p_scaffold_25769
Species: Delftia acidovorans (50%)
2 2045 bp 68.61 8.80 99.17
SCNpilot_expt_500_p_scaffold_46149
Species: Lautropia mirabilis (100%)
2 1204 bp 75.33 8.10 99.17
SCNpilot_expt_500_p_scaffold_21400
Order: Rhodocyclales (50%)
4 2414 bp 69.97 10.56 99.17
SCNpilot_expt_500_p_scaffold_13659
Species: Ralstonia solanacearum (50%)
2 3506 bp 70.74 7.70 99.17
SCNpilot_expt_500_p_scaffold_45607
Species: RLO_Betaproteobacteria_68_20 (50%)
2 1216 bp 74.18 7.20 99.18
SCNpilot_expt_500_p_scaffold_33744
Species: Sulfuritalea hydrogenivorans (50%)
2 1597 bp 71.70 9.86 99.19
SCNpilot_expt_500_p_scaffold_44984
Species: GWA2_Rhodocyclales_65_20_curated (50%)
2 1231 bp 70.84 5.89 99.19
SCNpilot_expt_500_p_scaffold_35268
Species: Lautropia mirabilis (50%)
2 1533 bp 72.86 4.57 99.22
SCNpilot_expt_500_p_scaffold_18692
Order: Burkholderiales (66.67%)
3 2717 bp 71.18 9.94 99.26
SCNpilot_expt_500_p_scaffold_7341
Class: Betaproteobacteria (80%)
5 5571 bp 70.78 5.83 99.30
SCNpilot_expt_500_p_scaffold_9566
Order: Burkholderiales (75%)
4 4595 bp 72.27 8.54 99.30
SCNpilot_expt_500_p_scaffold_28097
Species: Cupriavidus necator (50%)
2 1888 bp 71.50 7.15 99.31
SCNpilot_expt_500_p_scaffold_9014
Order: Burkholderiales (50%)
4 5404 bp 72.87 7.40 99.32
SCNpilot_expt_500_p_scaffold_27851
Species: Lautropia mirabilis (50%)
2 1903 bp 71.10 8.93 99.32
SCNpilot_expt_500_p_scaffold_29401
Species: R_Curvibacter_63_18 (50%)
2 1812 bp 68.05 12.14 99.34
SCNpilot_expt_500_p_scaffold_26488
Order: Burkholderiales (66.67%)
3 1993 bp 72.00 7.65 99.35
SCNpilot_expt_500_p_scaffold_23881
Species: R_Burkholderiales_61_11 (100%)
2 2189 bp 70.40 5.94 99.36
SCNpilot_expt_500_p_scaffold_17816
Genus: Herbaspirillum (50%)
4 2826 bp 73.25 7.96 99.36
SCNpilot_expt_500_p_scaffold_30333
Species: Thauera sp. 63 (50%)
2 1763 bp 70.73 6.10 99.38
SCNpilot_expt_500_p_scaffold_15105
Order: Burkholderiales (75%)
4 3233 bp 72.07 7.58 99.38
SCNpilot_expt_500_p_scaffold_22981
Class: Betaproteobacteria (50%)
4 2267 bp 73.71 4.96 99.38
SCNpilot_expt_500_p_scaffold_18142
Order: Burkholderiales (66.67%)
3 2786 bp 71.03 9.96 99.39
SCNpilot_expt_500_p_scaffold_19057
Species: Bordetella petrii (50%)
2 2674 bp 70.01 8.60 99.40
SCNpilot_expt_500_p_scaffold_47398
Species: R_Burkholderiales_57_36 (50%)
2 1177 bp 72.39 8.71 99.41
SCNpilot_expt_500_p_scaffold_31737
Species: Lautropia mirabilis (50%)
2 1690 bp 67.22 5.03 99.41
SCNpilot_expt_500_p_scaffold_14937
Order: Burkholderiales (75%)
4 4415 bp 76.63 7.25 99.41
Displaying items 951-1000 of 1169 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.