ggKbase home page
Advanced Search
Search Help

SCNPILOT_EXPT_1000_BF_Niastella_43_130

SCNPILOT_EXPT_500_P_Sphingobacteriales_43_2
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 2.15 Longest contig: 6.61 Kbp Bin length: 404.28 Kbp GC content: 43.32 %
Contigs count: 318 Features count: 578 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 7 / 55 BSCG 6 / 51 ASCG 1 / 38
Displaying items 51-100 of 318 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_32872
Species: Niastella koreensis (50%)
2 1637 bp 44.35 1.22 91.63
SCNpilot_expt_500_p_scaffold_38730
Species: Pedobacter antarcticus (50%)
2 1405 bp 42.56 2.49 93.31
SCNpilot_expt_500_p_scaffold_30499
Species: Niastella koreensis (100%)
2 1754 bp 46.92 1.43 89.45
SCNpilot_expt_500_p_scaffold_50291
Species: marine sediment metagenome (50%)
2 1119 bp 38.07 4.47 98.66
SCNpilot_expt_500_p_scaffold_32109
Species: GWF2_Verrucomicrobia_62_7_curated (50%)
2 1672 bp 42.34 2.24 95.10
SCNpilot_expt_500_p_scaffold_47126
Species: Niastella koreensis (50%)
2 1182 bp 41.20 3.38 51.52
SCNpilot_expt_500_p_scaffold_46847
Species: Runella slithyformis (50%)
2 1189 bp 38.27 2.52 31.03
SCNpilot_expt_500_p_scaffold_56224
Species: Niabella soli (50%)
2 1018 bp 33.30 1.00 43.61
SCNpilot_expt_500_p_scaffold_46081
Species: Flavihumibacter solisilvae (50%)
2 1206 bp 48.76 3.52 85.32
SCNpilot_expt_500_p_scaffold_51291
Species: Sphingobacterium sp. 21 (50%)
2 1101 bp 46.23 2.27 76.02
SCNpilot_expt_500_p_scaffold_54068
Species: Niabella soli (50%)
2 1052 bp 46.58 4.28 92.68
SCNpilot_expt_500_p_scaffold_49277
Species: Niastella koreensis (50%)
2 1138 bp 46.05 1.00 89.63
SCNpilot_expt_500_p_scaffold_52093
Species: Flavihumibacter petaseus (50%)
2 1085 bp 43.50 2.30 66.08
SCNpilot_expt_500_p_scaffold_43574
Species: Flavihumibacter solisilvae (50%)
2 1265 bp 45.69 1.00 97.23
SCNpilot_expt_500_p_scaffold_36832
Species: Flammeovirgaceae bacterium 311 (100%)
2 1472 bp 42.05 2.04 98.64
SCNpilot_expt_500_p_scaffold_44208
Species: Aurantimonas manganoxydans (50%)
2 1249 bp 46.12 2.80 96.08
SCNpilot_expt_500_p_scaffold_38747
Species: Niabella soli (100%)
2 1405 bp 48.61 1.00 86.69
SCNpilot_expt_500_p_scaffold_51556
Species: Solitalea canadensis (50%)
2 1096 bp 45.16 3.65 97.45
SCNpilot_expt_500_p_scaffold_52102
Species: Niastella koreensis (100%)
2 1085 bp 40.28 1.84 52.26
SCNpilot_expt_500_p_scaffold_49287
Species: Dyadobacter fermentans (50%)
2 1138 bp 43.59 2.64 87.26
SCNpilot_expt_500_p_scaffold_50312
Species: Sphingobacterium sp. 21 (50%)
2 1119 bp 48.08 2.23 99.73
SCNpilot_expt_500_p_scaffold_51305 2 1100 bp 42.18 1.82 96.27
SCNpilot_expt_500_p_scaffold_28187
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1882 bp 43.68 1.06 52.13
SCNpilot_expt_500_p_scaffold_48634
Species: Chitinophaga pinensis (50%)
2 1151 bp 35.88 3.04 90.96
SCNpilot_expt_500_p_scaffold_36588
Species: Dyadobacter fermentans (100%)
2 1481 bp 41.05 2.03 95.81
SCNpilot_expt_500_p_scaffold_37622
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1445 bp 44.01 2.42 81.80
SCNpilot_expt_500_p_scaffold_54855
Species: Porphyromonas sp. 31_2 (50%)
2 1039 bp 44.37 1.92 97.88
SCNpilot_expt_500_p_scaffold_46617
Species: BJP_IG2103_Cloacimonetes_45_8 (50%)
2 1194 bp 47.49 5.03 100.00
SCNpilot_expt_500_p_scaffold_25523
Species: Flavihumibacter petaseus (50%)
2 2062 bp 42.29 1.45 90.49
SCNpilot_expt_500_p_scaffold_45906
Species: Niabella soli (50%)
2 1209 bp 43.01 1.00 58.31
SCNpilot_expt_500_p_scaffold_47156
Species: Niastella koreensis (50%)
2 1182 bp 44.59 1.00 81.73
SCNpilot_expt_500_p_scaffold_37886
Species: Niastella koreensis (50%)
2 1435 bp 39.65 3.31 95.96
SCNpilot_expt_500_p_scaffold_46877
Species: Flavihumibacter petaseus (50%)
2 1188 bp 46.46 2.53 87.37
SCNpilot_expt_500_p_scaffold_51574
Species: Cyclobacteriaceae bacterium AK24 (50%)
2 1095 bp 48.40 1.83 86.85
SCNpilot_expt_500_p_scaffold_49306
Species: Chryseobacterium vrystaatense (50%)
2 1138 bp 43.67 5.27 36.91
SCNpilot_expt_500_p_scaffold_50586
Species: RBG_16_Spirochaete_67_19_curated (50%)
2 1114 bp 41.74 1.00 71.90
SCNpilot_expt_500_p_scaffold_43091
Species: Chryseobacterium taiwanense (50%)
2 1278 bp 41.00 2.74 45.54
SCNpilot_expt_500_p_scaffold_50589
Species: Algoriphagus machipongonensis (50%)
2 1680 bp 46.61 1.79 91.43
SCNpilot_expt_500_p_scaffold_54616
Species: Flavihumibacter solisilvae (50%)
2 1043 bp 38.73 2.16 74.21
SCNpilot_expt_500_p_scaffold_38778
Species: Chitinophaga pinensis (50%)
2 1403 bp 42.84 3.21 100.07
SCNpilot_expt_500_p_scaffold_55708
Species: Niastella koreensis (50%)
2 1025 bp 48.98 1.71 98.63
SCNpilot_expt_500_p_scaffold_36358
Species: Flavihumibacter petaseus (50%)
2 1490 bp 44.03 2.35 84.77
SCNpilot_expt_500_p_scaffold_49318
Species: GWA2_Bacteroidetes_30_7_curated (50%)
2 1138 bp 39.98 1.32 79.61
SCNpilot_expt_500_p_scaffold_37136
Species: Chitinophaga pinensis (50%)
2 1462 bp 44.39 1.71 90.49
SCNpilot_expt_500_p_scaffold_35864
Species: Niastella koreensis (100%)
2 1510 bp 42.19 1.32 59.40
SCNpilot_expt_500_p_scaffold_41031
Species: Chitinophaga pinensis (50%)
2 1334 bp 43.78 1.12 90.18
SCNpilot_expt_500_p_scaffold_45927
Species: Niastella koreensis (50%)
2 1209 bp 45.91 1.00 96.77
SCNpilot_expt_500_p_scaffold_52392
Species: Blastopirellula marina (50%)
2 1080 bp 38.43 2.31 101.94
SCNpilot_expt_500_p_scaffold_36875
Species: Niastella koreensis (50%)
2 1471 bp 46.43 2.38 90.96
SCNpilot_expt_500_p_scaffold_57042
Species: Niastella koreensis (50%)
2 1005 bp 48.66 1.74 97.61
Displaying items 51-100 of 318 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.