ggKbase | organisms

Consensus taxonomy: Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 4.58 Longest contig: 4.49 Kbp Bin length: 537.69 Kbp GC content: 64.34 %

Contigs count: 391 Features count: 846 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 BSCG 13 / 51 MC: 1 ASCG 4 / 38 MC: 1

Displaying items 201-250 of 391 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_expt_500_p_scaffold_56039 Species: Thiobacillus denitrificans (50%)	2	1021 bp	59.35	1.47	84.33
SCNpilot_expt_500_p_scaffold_42761 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1286 bp	62.05	1.94	100.31
SCNpilot_expt_500_p_scaffold_49601 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1132 bp	59.72	3.09	76.06
SCNpilot_expt_500_p_scaffold_48435 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1155 bp	63.55	4.55	100.26
SCNpilot_expt_500_p_scaffold_54907 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1038 bp	56.45	1.00	100.00
SCNpilot_expt_500_p_scaffold_45188 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1226 bp	59.38	4.49	98.86
SCNpilot_expt_500_p_scaffold_32446 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1657 bp	65.12	3.32	99.94
SCNpilot_expt_500_p_scaffold_37167 Species: Thiobacillus denitrificans (50%)	2	1461 bp	67.21	3.76	98.77
SCNpilot_expt_500_p_scaffold_53982 Species: Thiobacillus denitrificans (50%)	2	1054 bp	62.52	1.90	89.09
SCNpilot_expt_500_p_scaffold_43136 Species: Thiobacillus denitrificans (50%)	2	1277 bp	62.41	3.52	68.83
SCNpilot_expt_500_p_scaffold_55744 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1025 bp	65.95	4.15	100.10
SCNpilot_expt_500_p_scaffold_53219 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1066 bp	60.69	2.81	97.94
SCNpilot_expt_500_p_scaffold_57077 Species: CG_Rhodocyc_01 (50%)	2	1005 bp	62.69	2.99	91.64
SCNpilot_expt_500_p_scaffold_45453 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1220 bp	63.61	3.28	90.49
SCNpilot_expt_500_p_scaffold_36399 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1489 bp	66.96	5.54	91.47
SCNpilot_expt_500_p_scaffold_55756 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1025 bp	70.24	1.46	98.63
SCNpilot_expt_500_p_scaffold_33493 Species: Aeromonas veronii (50%)	2	1608 bp	56.03	3.73	82.46
SCNpilot_expt_500_p_scaffold_49622 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1132 bp	62.90	2.87	79.77
SCNpilot_expt_500_p_scaffold_52696 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1075 bp	65.21	1.86	85.95
SCNpilot_expt_500_p_scaffold_32466 Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated (50%)	2	1656 bp	65.82	2.72	100.18
SCNpilot_expt_500_p_scaffold_40617 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1347 bp	68.00	4.64	88.86
SCNpilot_expt_500_p_scaffold_56836 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1009 bp	58.37	2.48	93.95
SCNpilot_expt_500_p_scaffold_54676 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1042 bp	67.75	3.36	99.33
SCNpilot_expt_500_p_scaffold_39695 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1375 bp	61.24	3.45	69.38
SCNpilot_expt_500_p_scaffold_51649 Species: Thiobacillus denitrificans (50%)	2	1094 bp	60.69	1.14	80.07
SCNpilot_expt_500_p_scaffold_49379 Species: Burkholderia sp. BT03 (50%)	2	1137 bp	64.64	3.96	98.15
SCNpilot_expt_500_p_scaffold_53500 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1061 bp	66.35	1.41	100.09
SCNpilot_expt_500_p_scaffold_43421 Species: Methylophaga aminisulfidivorans (50%)	2	1270 bp	63.70	4.13	97.80
SCNpilot_expt_500_p_scaffold_44056 Species: Thiobacillus denitrificans (50%)	2	1253 bp	62.01	3.99	99.84
SCNpilot_expt_500_p_scaffold_50154 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1121 bp	67.08	2.45	92.06
SCNpilot_expt_500_p_scaffold_36685 Species: CG_Beta_01 (50%)	2	1478 bp	65.56	3.04	94.18
SCNpilot_expt_500_p_scaffold_48476 Species: Thiobacillus denitrificans (50%)	2	1155 bp	64.85	2.16	100.26
SCNpilot_expt_500_p_scaffold_50673 Species: Janthinobacterium sp. HH01 (50%)	2	1112 bp	61.60	2.70	86.33
SCNpilot_expt_500_p_scaffold_54702 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1042 bp	64.78	4.56	96.16
SCNpilot_expt_500_p_scaffold_46463 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1197 bp	57.39	3.76	52.38
SCNpilot_expt_500_p_scaffold_44327 Species: Thiobacillus denitrificans (50%)	2	1246 bp	64.93	2.41	98.72
SCNpilot_expt_500_p_scaffold_39721 Species: Rhodocyclaceae bacterium PG1-Ca6 (50%)	2	1374 bp	64.34	5.46	100.00
SCNpilot_expt_500_p_scaffold_51672 Species: Thermocrinis ruber (50%)	2	1093 bp	68.25	1.37	99.36
SCNpilot_expt_500_p_scaffold_29906 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1784 bp	64.46	3.92	99.38
SCNpilot_expt_500_p_scaffold_44585 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1241 bp	58.82	61.44	81.71
SCNpilot_expt_500_p_scaffold_40650 Species: Thiobacillus denitrificans (100%)	2	1346 bp	68.72	2.60	97.40
SCNpilot_expt_500_p_scaffold_35699	2	1515 bp	61.25	1.65	50.89
SCNpilot_expt_500_p_scaffold_36451 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)	2	1487 bp	63.48	2.02	99.66
SCNpilot_expt_500_p_scaffold_44339 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1246 bp	67.74	5.62	101.36
SCNpilot_expt_500_p_scaffold_33796 Species: Thiobacillus denitrificans (100%)	2	1595 bp	62.76	2.98	100.06
SCNpilot_expt_500_p_scaffold_54460 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1046 bp	59.46	4.78	70.84
SCNpilot_expt_500_p_scaffold_37487 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1450 bp	63.03	2.41	100.14
SCNpilot_expt_500_p_scaffold_41638 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1317 bp	64.69	2.85	91.12
SCNpilot_expt_500_p_scaffold_51942 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)	2	1088 bp	67.83	2.76	93.20
SCNpilot_expt_500_p_scaffold_51176 Species: GWF2_Sideroxydans_59_14_curated (50%)	2	1103 bp	62.56	3.17	90.84

Displaying items 201-250 of 391 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNPILOT_EXPT_300_BF_Thiobacillus_SCN2_64_69) and add all its contigs / scaffolds to the organism you choose below

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Other organism

SCNPILOT_EXPT_300_BF_Thiobacillus_SCN2_64_69

SCNPILOT_EXPT_500_P_Hydrogenophilales_64_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

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