ggKbase | organisms

Consensus taxonomy: Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 4.58 Longest contig: 4.49 Kbp Bin length: 537.69 Kbp GC content: 64.34 %

Contigs count: 391 Features count: 846 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 BSCG 13 / 51 MC: 1 ASCG 4 / 38 MC: 1

Displaying items 251-300 of 391 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_expt_500_p_scaffold_34106 Species: BJP_08E140C01_Dechloromonas_61_78 (50%)	2	1581 bp	69.26	2.21	99.43
SCNpilot_expt_500_p_scaffold_38628 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1409 bp	63.38	3.90	97.09
SCNpilot_expt_500_p_scaffold_53283 Species: Azoarcus sp. BH72 (50%)	2	1065 bp	71.27	2.11	94.93
SCNpilot_expt_500_p_scaffold_40925 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1337 bp	64.70	3.18	99.63
SCNpilot_expt_500_p_scaffold_30402 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1759 bp	61.17	2.84	85.11
SCNpilot_expt_500_p_scaffold_50451 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1116 bp	64.34	1.79	99.73
SCNpilot_expt_500_p_scaffold_36215 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1495 bp	61.67	2.01	99.73
SCNpilot_expt_500_p_scaffold_42080 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1304 bp	70.25	3.83	99.39
SCNpilot_expt_500_p_scaffold_52761 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1074 bp	66.20	3.72	89.66
SCNpilot_expt_500_p_scaffold_31099 Species: Bradyrhizobium sp. ORS 375 (50%)	2	1723 bp	56.30	5.80	77.48
SCNpilot_expt_500_p_scaffold_38390 Species: Sideroxydans lithotrophicus (50%)	2	1418 bp	58.96	5.29	78.28
SCNpilot_expt_500_p_scaffold_33567 Species: Thiobacillus denitrificans (50%)	2	1605 bp	66.04	4.05	96.26
SCNpilot_expt_500_p_scaffold_39504 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1380 bp	62.03	3.44	91.74
SCNpilot_expt_500_p_scaffold_37000 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1467 bp	64.21	6.99	98.77
SCNpilot_expt_500_p_scaffold_54487 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1045 bp	65.07	3.83	90.43
SCNpilot_expt_500_p_scaffold_38139 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1426 bp	67.81	2.45	90.67
SCNpilot_expt_500_p_scaffold_43739 Species: Herbaspirillum sp. CF444 (50%)	2	1261 bp	60.75	3.97	73.75
SCNpilot_expt_500_p_scaffold_55580 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1027 bp	64.07	1.95	91.14
SCNpilot_expt_500_p_scaffold_36230 Species: Thiobacillus denitrificans (50%)	2	1495 bp	63.95	3.01	97.73
SCNpilot_expt_500_p_scaffold_54242 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1049 bp	65.97	3.81	92.37
SCNpilot_expt_500_p_scaffold_34398 Species: Thioalkalivibrio sulfidiphilus (50%)	2	1569 bp	64.12	3.82	94.26
SCNpilot_expt_500_p_scaffold_44125 Species: Thiobacillus denitrificans (50%)	2	1251 bp	64.51	3.60	91.37
SCNpilot_expt_500_p_scaffold_47054 Species: Xanthomonas fuscans (50%)	2	1184 bp	58.87	2.96	96.28
SCNpilot_expt_500_p_scaffold_51474 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1097 bp	63.54	3.42	98.72
SCNpilot_expt_500_p_scaffold_56412 Species: Desulfovibrio gigas (50%)	2	1015 bp	55.67	3.94	99.90
SCNpilot_expt_500_p_scaffold_37279 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1457 bp	65.34	4.80	100.07
SCNpilot_expt_500_p_scaffold_55088 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1035 bp	70.14	3.38	76.23
SCNpilot_expt_500_p_scaffold_30187 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1770 bp	68.93	4.80	99.32
SCNpilot_expt_500_p_scaffold_36763 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1475 bp	67.53	2.88	94.17
SCNpilot_expt_500_p_scaffold_40205 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1358 bp	66.72	4.79	81.52
SCNpilot_expt_500_p_scaffold_48814 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1147 bp	66.61	1.74	101.22
SCNpilot_expt_500_p_scaffold_46281 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1201 bp	63.95	3.33	98.92
SCNpilot_expt_500_p_scaffold_47589 Species: Moorea producens (50%)	2	1173 bp	66.07	5.54	99.49
SCNpilot_expt_500_p_scaffold_48822 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1147 bp	64.17	4.80	96.25
SCNpilot_expt_500_p_scaffold_48056 Species: Thiobacillus denitrificans (50%)	2	1163 bp	68.36	4.08	90.54
SCNpilot_expt_500_p_scaffold_56176 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1019 bp	65.36	5.89	100.10
SCNpilot_expt_500_p_scaffold_49992 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1125 bp	70.04	2.22	100.27
SCNpilot_expt_500_p_scaffold_56690 Species: Thiobacillus denitrificans (50%)	2	1011 bp	67.06	2.47	81.31
SCNpilot_expt_500_p_scaffold_50506 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1115 bp	72.02	1.35	100.36
SCNpilot_expt_500_p_scaffold_38436 Species: Thiobacillus denitrificans (50%)	2	1416 bp	68.29	6.89	95.13
SCNpilot_expt_500_p_scaffold_37814 Species: BJP_IG2102_Gammaproteobacteria_62_140 (50%)	2	1438 bp	62.93	1.74	94.92
SCNpilot_expt_500_p_scaffold_55109 Species: Nitrosomonas sp. Is79A3 (50%)	2	1035 bp	63.77	3.86	99.42
SCNpilot_expt_500_p_scaffold_47854 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1167 bp	71.89	1.71	97.17
SCNpilot_expt_500_p_scaffold_33359 Species: CG_Hydro_01 (50%)	2	1615 bp	65.76	4.02	96.41
SCNpilot_expt_500_p_scaffold_25457 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	2067 bp	62.51	3.27	94.34
SCNpilot_expt_500_p_scaffold_48832 Species: Methyloversatilis universalis (50%)	2	1147 bp	68.44	2.18	100.17
SCNpilot_expt_500_p_scaffold_47346 Species: Thiobacillus denitrificans (50%)	2	1178 bp	66.13	2.97	91.68
SCNpilot_expt_500_p_scaffold_34692 Species: Sideroxydans lithotrophicus (50%)	2	1555 bp	59.36	2.57	92.60
SCNpilot_expt_500_p_scaffold_39559 Species: Acidithiobacillus ferrooxidans (100%)	1	1378 bp	59.94	2.18	99.93
SCNpilot_expt_500_p_scaffold_42656 Species: GWA2_Gallionellales_59_43_curated (100%)	1	1289 bp	52.83	3.10	99.84

Displaying items 251-300 of 391 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNPILOT_EXPT_300_BF_Thiobacillus_SCN2_64_69) and add all its contigs / scaffolds to the organism you choose below

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Other organism

SCNPILOT_EXPT_300_BF_Thiobacillus_SCN2_64_69

SCNPILOT_EXPT_500_P_Hydrogenophilales_64_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

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