ggKbase home page

SCNpilot_expt_500_p_scaffold_1503

Search features with annotation key words

Displaying 19 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1503_1
Flavobacterium aquatile, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1..402
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GWJ3_FLAPJ
Uncharacterized protein {ECO:0000313|EMBL:KGD67088.1}; TaxID=1453498 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium aquatile LMG 4008.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1503_2
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(404..1174)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. CF136 RepID=J3C4V9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KIA98218.1}; TaxID=1566023 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1503_3
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1269..2414
DNA (1146bp) protein (382aa)
Cys/Met metabolism PLP-dependent enzyme; K01760 cystathionine beta-lyase [EC:4.4.1.8]
Cys/Met metabolism PLP-dependent enzyme n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GWJ4_FLAPJ
Cystathionine gamma-synthase {ECO:0000313|EMBL:KFF20370.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
SCNpilot_expt_500_p_scaffold_1503_4
Flavobacterium aquatile, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2465..3244)
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FMX9_9FLAO rbh
Glutamate dehydrogenase {ECO:0000313|EMBL:KGD67094.1}; TaxID=1453498 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium aquatile LMG 4008.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_1503_5
Flavobacterium aquatile, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3409..4854
DNA (1446bp) protein (482aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4] rbh
Glutamate dehydrogenase n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GWB2_FLAPJ rbh
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1453498 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium aquatile LMG 4008.;"
SCNpilot_expt_500_p_scaffold_1503_6
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4987..7281
DNA (2295bp) protein (765aa)
Uncharacterized protein n=1 Tax=Flavobacterium saliperosum S13 RepID=V6S486_9FLAO rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIA87097.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
periplasmic ligand-binding sensor protein rbh
SCNpilot_expt_500_p_scaffold_1503_7
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

7297..8010
DNA (714bp) protein (238aa)
DNA recombination and repair protein RecO n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SR58_9FLAO rbh
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
recO; DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O) rbh
SCNpilot_expt_500_p_scaffold_1503_8
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8028..8630)
DNA (603bp) protein (201aa)
DNA-N1-methyladenine dioxygenase n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FJL3_FLAJ1 rbh
Contig30, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77692.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
2OG-Fe(II) oxygenase rbh
SCNpilot_expt_500_p_scaffold_1503_9
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8617..8874)
DNA (258bp) protein (86aa)
Uncharacterized protein n=3 Tax=Elizabethkingia RepID=L8K033_9FLAO
Metal-binding protein {ECO:0000313|EMBL:KGO10598.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1503_10
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8877..9590)
DNA (714bp) protein (238aa)
Prolyl 4-hydroxylase subunit alpha n=1 Tax=Flavobacterium sp. F52 RepID=J0RNK2_9FLAO rbh
Uncharacterized protein {ECO:0000313|EMBL:EZH74191.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
hypothetical protein; K09990 hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_1503_11
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9594..10445)
DNA (852bp) protein (284aa)
methylated-DNA--protein-cysteine methyltransferase; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
O-6-methylguanine DNA methyltransferase n=1 Tax=Flavobacterium sp. CF136 RepID=J3C860_9FLAO
Strain DSM 12611 Contig05, whole genome shotgun sequence {ECO:0000313|EMBL:KIO53663.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
SCNpilot_expt_500_p_scaffold_1503_12
Maribacter sp. HTCC2170, Maribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10512..11132)
DNA (621bp) protein (207aa)
Sporulation regulation protein n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S1Y2_9FLAO
putative transcriptional regulator; K07734 transcriptional regulator
Probable transcriptional regulator {ECO:0000313|EMBL:EAR01690.1}; TaxID=313603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Maribacter.;" source="Maribacter sp. (strain HTCC2170 / KCCM 42371).;"
SCNpilot_expt_500_p_scaffold_1503_13
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11151..11966)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6H0F0_FLAPJ
Contig13, whole genome shotgun sequence {ECO:0000313|EMBL:KIO78471.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein; K07017
SCNpilot_expt_500_p_scaffold_1503_14
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(11971..13053)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GG20_9BACT id=1244724 bin=RBG9 species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_16_Chloroflexi_57_11_curated
SCNpilot_expt_500_p_scaffold_1503_15
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13163..13993
DNA (831bp) protein (277aa)
Prestalk A differentiation protein A n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GG44_9BACT rbh
Prestalk A differentiation protein A {ECO:0000313|EMBL:CCH52869.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
NmrA family protein rbh
SCNpilot_expt_500_p_scaffold_1503_16
unknown

Not on your lists

comp(14539..14688)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1503_17
GWF1_Flavobacteria_32_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14836..15021)
DNA (186bp) protein (62aa)
Phage integrase family protein id=2763864 bin=GWF1_Flavobacteria_32_7 species=Flavobacterium johnsoniae genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF1_Flavobacteria_32_7 organism_group=Bacteroidetes
phage integrase
Tax=GWF1_Flavobacteria_32_7_curated
SCNpilot_expt_500_p_scaffold_1503_18
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15379..15834)
DNA (456bp) protein (152aa)
Uncharacterized protein {ECO:0000313|EMBL:KGO78846.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
SCNpilot_expt_500_p_scaffold_1503_19
Chryseobacterium vrystaatense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15850..16716)
DNA (867bp) protein (289aa)
RHS repeat-associated core domain protein-containing protein n=1 Tax=Flavobacterium sp. CF136 RepID=J2SJC2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF23446.1}; TaxID=307480 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium vrystaatense.;"
YD repeat-/RHS repeat-containing protein
Displaying 19 items

View Taxonomy