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SCNpilot_expt_500_p_scaffold_1904

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1904_1
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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2..829
DNA (828bp) protein (276aa)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
ubiquinone/menaquinone biosynthesis methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] rbh
ubiquinone/menaquinone biosynthesis methyltransferase n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B39FFB rbh
SCNpilot_expt_500_p_scaffold_1904_2
Flavobacterium aquatile, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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832..1536
DNA (705bp) protein (235aa)
PorT protein n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S5C7_9FLAO rbh
PorT protein {ECO:0000313|EMBL:KGD67943.1}; TaxID=1453498 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium aquatile LMG 4008.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_1904_3
GWF1_Flavobacteria_32_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

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comp(1539..2264)
DNA (726bp) protein (242aa)
Putative tRNA/rRNA methyltransferase id=2720526 bin=GWF1_Flavobacteria_32_7 species=Flavobacteria bacterium BAL38 genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF1_Flavobacteria_32_7 organism_group=Bacteroidetes rbh
tRNA/rRNA methyltransferase SpoU; K03437 RNA methyltransferase, TrmH family rbh
Tax=GWF1_Flavobacteria_32_7_curated
SCNpilot_expt_500_p_scaffold_1904_4
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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2300..4867
DNA (2568bp) protein (856aa)
Putative uncharacterized protein n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FPH8_9FLAO rbh
Membrane protein {ECO:0000313|EMBL:KIA82769.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
surface antigen (D15) rbh
SCNpilot_expt_500_p_scaffold_1904_5
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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4917..5984
DNA (1068bp) protein (356aa)
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:KFF07017.1}; EC=4.1.2.13 {ECO:0000313|EMBL:KFF07017.1};; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
fructose-bisphosphate aldolase (EC:4.1.2.13); K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13] rbh
fructose-bisphosphate aldolase n=1 Tax=Flavobacterium sp. WG21 RepID=UPI00034BFE94 rbh
SCNpilot_expt_500_p_scaffold_1904_6
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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6067..6921
DNA (855bp) protein (285aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
accD; acetyl-coenzyme A carboxylase carboxyl transferase beta subunit (EC:6.4.1.2); K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2] rbh
acetyl-CoA carboxylase carboxyl transferase subunit beta n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B46C46 rbh
SCNpilot_expt_500_p_scaffold_1904_7
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(6981..8231)
DNA (1251bp) protein (417aa)
ABC-type antimicrobial peptide transport system, permease component n=1 Tax=Flavobacterium sp. CF136 RepID=J3C7Z9_9FLAO rbh
ABC transporter permease {ECO:0000313|EMBL:KIA82691.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_1904_8
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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8512..10038
DNA (1527bp) protein (509aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3 3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] rbh
IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SYY0_9FLAO rbh
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
SCNpilot_expt_500_p_scaffold_1904_9
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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10096..11124
DNA (1029bp) protein (343aa)
cell shape-determining protein MreB n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B7676A rbh
Rod shape-determining protein MreB {ECO:0000313|EMBL:KIA82690.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
mreB; Rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins rbh
SCNpilot_expt_500_p_scaffold_1904_10
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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11137..11967
DNA (831bp) protein (277aa)
Cell shape-determining protein MreC id=4495388 bin=GWA2_Flavobacterium_35_26 species=Flavobacterium frigoris genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds rbh
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC rbh
SCNpilot_expt_500_p_scaffold_1904_11
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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11960..12469
DNA (510bp) protein (170aa)
rod shape-determining protein MreD n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B6C1DC
Rod shape-determining protein MreD {ECO:0000313|EMBL:KFC58268.1}; TaxID=1492737 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1904_12
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12466..13995
DNA (1530bp) protein (510aa)
pbpA; Penicillin-binding protein 2. Peptidoglycan glycosyltransferase (EC:2.4.1.129); K05515 penicillin-binding protein 2 rbh
Peptidoglycan glycosyltransferase n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S4M4_9FLAO rbh
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:ESU21638.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
Displaying 12 items

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