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SCNpilot_expt_500_p_scaffold_4275

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_4275_1
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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1..123
DNA (123bp) protein (41aa)
cca; tRNA nucleotidyltransferase (EC:2.7.7.72); K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
Putative domain HDIG-containing protein n=1 Tax=Flavobacterium sp. CF136 RepID=J3C9G6_9FLAO
tRNA nucleotidyltransferase {ECO:0000313|EMBL:KFF16904.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
SCNpilot_expt_500_p_scaffold_4275_2
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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159..1178
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. CF136 RepID=J2JG84_9FLAO rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL67005.1}; Flags: Precursor;; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15 rbh
SCNpilot_expt_500_p_scaffold_4275_3
unknown

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1244..1438
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_4275_4
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(1727..2482)
DNA (756bp) protein (252aa)
LytTR family two component transcriptional regulator n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SIJ3_9FLAO rbh
LytTR family two component transcriptional regulator {ECO:0000313|EMBL:ESU26254.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
LytTR family two component transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_4275_5
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(2522..2839)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B466CD
Histidine kinase {ECO:0000313|EMBL:KGO84716.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_4275_6
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(2844..3239)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00037A7844
Histidine kinase {ECO:0000313|EMBL:KGO84715.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
signal transduction histidine kinase LytS
SCNpilot_expt_500_p_scaffold_4275_7
BJP_IG2102_Flavobacteriales_34_12, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(3264..4328)
DNA (1065bp) protein (355aa)
histidine kinase n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B6A228 rbh
two-component histidine kinase sensor with 2TM superfamily domain rbh
Tax=BJP_IG2102_Flavobacteriales_34_12
SCNpilot_expt_500_p_scaffold_4275_8
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(4350..4979)
DNA (630bp) protein (210aa)
Putative uncharacterized protein n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FSI7_9FLAO
Putative uncharacterized protein {ECO:0000313|EMBL:EIA08263.1}; TaxID=1086011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_4275_9
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(5388..7541)
DNA (2154bp) protein (718aa)
Putative outer membrane receptor protein n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FSI6_9FLAO rbh
TonB-dependent receptor {ECO:0000313|EMBL:KIA85586.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
TonB-dependent receptor, plug rbh
SCNpilot_expt_500_p_scaffold_4275_10
unknown

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comp(7538..7660)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_4275_11
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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7707..8084
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00037019E1
Transposase {ECO:0000313|EMBL:KGO93090.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
transposase
SCNpilot_expt_500_p_scaffold_4275_12
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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8090..8479
DNA (390bp) protein (130aa)
Glyoxylase-like protein n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FSI3_9FLAO
Glyoxylase-like protein {ECO:0000313|EMBL:EIA08259.1}; TaxID=1086011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
bleomycin resistance protein
SCNpilot_expt_500_p_scaffold_4275_13
Flavobacterium sp. EM1321, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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8585..9121
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Flavobacterium sp. WG21 RepID=UPI00034CE4DC
Uncharacterized protein {ECO:0000313|EMBL:KDN56352.1}; TaxID=1492738 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1321.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_4275_14
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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9233..9592
DNA (360bp) protein (120aa)
S23 ribosomal protein n=1 Tax=Flavobacterium sp. WG21 RepID=UPI00037A411B
S23 ribosomal protein {ECO:0000313|EMBL:KIA94003.1}; TaxID=1566023 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
S23 ribosomal protein
SCNpilot_expt_500_p_scaffold_4275_15
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9643..10701
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6SD89_9FLAO rbh
Nucleoid-associated protein NdpA {ECO:0000313|EMBL:KGO90150.1}; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_4275_16
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

10892..11131
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Imtechella halotolerans K1 RepID=I0WJY3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KIA85896.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
Displaying 16 items

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