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SCNpilot_expt_500_p_scaffold_1403

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1403_1
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(217..1440)
DNA (1224bp) protein (408aa)
DNA replication and repair protein RecF n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=RECF_ROSCS rbh
DNA replication and repair protein RecF; K03629 DNA replication and repair protein RecF rbh
DNA replication and repair protein RecF {ECO:0000255|HAMAP-Rule:MF_00365}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
SCNpilot_expt_500_p_scaffold_1403_2
RBG_16_Chloroflexi_48_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(1503..3131)
DNA (1629bp) protein (543aa)
atm:ANT_22650 two-component sensor histidine kinase id=1247872 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
integral membrane sensor signal transduction histidine kinase
Tax=RBG_16_Chloroflexi_48_8_curated
SCNpilot_expt_500_p_scaffold_1403_3
Arthrospira platensis, Arthrospira, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3317..4525
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Arthrospira platensis C1 RepID=K1VNM6_ARTPT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD05830.1}; TaxID=459495 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Arthrospira.;" source="Arthrospira platensis C1.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_1403_4
unknown

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4653..5591
DNA (939bp) protein (313aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1403_5
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

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5724..7571
DNA (1848bp) protein (616aa)
Peptidase S9 prolyl oligopeptidase active site domain protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TNW7_9CHLR rbh
peptidase S9 prolyl oligopeptidase active site domain protein rbh
Tax=RBG_16_Chloroflexi_57_9_curated
SCNpilot_expt_500_p_scaffold_1403_6
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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7695..8402
DNA (708bp) protein (236aa)
Beta-phosphoglucomutase family hydrolase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TIE8_9CHLR
Beta-phosphoglucomutase family hydrolase {ECO:0000313|EMBL:EFH89205.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
HAD-superfamily hydrolase
SCNpilot_expt_500_p_scaffold_1403_7
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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8406..9008
DNA (603bp) protein (201aa)
Transcriptional regulator, PadR-like family n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G8L6_CHLAD
PadR-like family transcriptional regulator
Transcriptional regulator, PadR-like family {ECO:0000313|EMBL:ACL24278.1}; TaxID=326427 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
SCNpilot_expt_500_p_scaffold_1403_8
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9209..10042)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y3Q9_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP38855.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCNpilot_expt_500_p_scaffold_1403_9
Thermoanaerobacter thermohydrosulfuricus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(10052..10474)
DNA (423bp) protein (141aa)
methylmalonyl-CoA epimerase; K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
Methylmalonyl-CoA epimerase {ECO:0000313|EMBL:EMT38968.1}; EC=4.4.1.5 {ECO:0000313|EMBL:EMT38968.1};; TaxID=1198630 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter thermohydrosulfuricus WC1.;"
Methylmalonyl-CoA epimerase n=4 Tax=Thermoanaerobacter RepID=G2MXS7_9THEO
SCNpilot_expt_500_p_scaffold_1403_10

Not on your lists

comp(10554..10949)
DNA (396bp) protein (132aa)
Uncharacterized protein n=2 Tax=Rhodococcus RepID=Q0S7I1_RHOSR
Uncharacterized protein {ECO:0000313|EMBL:AIW63007.1}; TaxID=1562172 species="Bacteria; environmental samples.;" source="uncultured bacterium BAC-AB1442/1414/561.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1403_11
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10990..11385)
DNA (396bp) protein (132aa)
glyoxalase/bleomycin resistance protein/dioxygenase (EC:1.13.11.27 1.13.11.39)
glyoxalase n=1 Tax=Acaryochloris sp. CCMEE 5410 RepID=UPI00024848C7
Glyoxalase {ECO:0000313|EMBL:KGM33315.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_expt_500_p_scaffold_1403_12
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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comp(11408..11944)
DNA (537bp) protein (179aa)
Adaptin n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WK64_9EURY
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
SCNpilot_expt_500_p_scaffold_1403_13
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11949..12785)
DNA (837bp) protein (279aa)
Hydrolase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PZG5_METMA
hydrolase
Hydrolase {ECO:0000313|EMBL:AAM30225.1}; TaxID=192952 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 /; JCM 11833 / OCM 88) (Methanosarcina frisia).;"
SCNpilot_expt_500_p_scaffold_1403_14
BJP_IG2158_Thermincola_46_17, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13272..13847
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI00035F5DB8
hypothetical protein
Tax=BJP_IG2158_Thermincola_46_17
SCNpilot_expt_500_p_scaffold_1403_15
Synechococcus sp. JA-2-3B'a(2-13), Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

13965..14666
DNA (702bp) protein (234aa)
Phospholipase/carboxylesterase family protein n=1 Tax=Synechococcus sp. (strain JA-2-3B'a(2-13)) RepID=Q2JI12_SYNJB
phospholipase/carboxylesterase family protein; K06999 phospholipase/carboxylesterase
Phospholipase/carboxylesterase family protein {ECO:0000313|EMBL:ABD03759.1}; TaxID=321332 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium; Yellowstone B-Prime).;"
SCNpilot_expt_500_p_scaffold_1403_16
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14956..15270
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Paenibacillus mucilaginosus K02 RepID=I0BD70_9BACL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFH60317.1}; TaxID=997761 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus K02.;"
SCNpilot_expt_500_p_scaffold_1403_17
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

15312..16502
DNA (1191bp) protein (397aa)
queuine tRNA-ribosyltransferase; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] rbh
Queuine tRNA-ribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00168}; EC=2.4.2.29 {ECO:0000255|HAMAP-Rule:MF_00168};; Guanine insertion enzyme {ECO:0000255|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000255|HAMAP-Rule:MF_00168}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
Queuine tRNA-ribosyltransferase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=TGT_HERA2 rbh
SCNpilot_expt_500_p_scaffold_1403_18
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

16730..17476
DNA (747bp) protein (249aa)
cystathionine beta-synthase; K01697 cystathionine beta-synthase [EC:4.2.1.22]
Cystathionine beta-synthase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5Q2_SPHTD
Cystathionine beta-synthase {ECO:0000313|EMBL:ACZ39454.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
SCNpilot_expt_500_p_scaffold_1403_19
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

17524..18165
DNA (642bp) protein (214aa)
cystathionine beta-synthase; K01697 cystathionine beta-synthase [EC:4.2.1.22]
Cystathionine beta-synthase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5Q2_SPHTD
Cystathionine beta-synthase {ECO:0000313|EMBL:ACZ39454.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
SCNpilot_expt_500_p_scaffold_1403_20
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

18367..18594
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TVN3_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EFH84266.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1403_21
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

18689..19843
DNA (1155bp) protein (385aa)
cystathionine gamma-synthase (EC:2.5.1.48); K01739 cystathionine gamma-synthase [EC:2.5.1.48] id=24427956 bin=RBG_19FT_COMBO_GAL15_69_19 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate rbh
cystathionine gamma-synthase (EC:2.5.1.48); K01739 cystathionine gamma-synthase [EC:2.5.1.48] rbh
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
SCNpilot_expt_500_p_scaffold_1403_22
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(19980..20480)
DNA (501bp) protein (167aa)
Transcriptional regulator, TetR family n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TWI1_9CHLR
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EFH84564.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
TetR family transcriptional regulator
Displaying 22 items

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