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SCNpilot_expt_500_p_scaffold_1831

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1831_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(3..1868)
DNA (1866bp) protein (622aa)
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EDY22105.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EDY22105.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3)
Multi-sensor hybrid histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU67_9BACT
SCNpilot_expt_500_p_scaffold_1831_2
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(2172..2540)
DNA (369bp) protein (123aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Moorea producens 3L RepID=F4XLK4_9CYAN
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EGJ34479.1}; TaxID=489825 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moorea producens 3L.;"
response regulator receiver protein
SCNpilot_expt_500_p_scaffold_1831_3
unknown

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comp(2611..2859)
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1831_4

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comp(2996..3502)
DNA (507bp) protein (169aa)
Transcription activator effector binding n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZWI7_OPITP
Marine sediment metagenome DNA, contig: S01H1_S24087 {ECO:0000313|EMBL:GAG14242.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transcription activator effector binding
SCNpilot_expt_500_p_scaffold_1831_5
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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3625..4608
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Osedax symbiont Rs2 RepID=S6HTB4_9GAMM
helix-turn-helix type 11 domain-containing protein
Tax=BJP_IG2157_Anaerolineales_55_23
SCNpilot_expt_500_p_scaffold_1831_6
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

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comp(4605..7406)
DNA (2802bp) protein (934aa)
Adenylate/guanylate cyclase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SSM8_9BACT rbh
Adenylate/guanylate cyclase {ECO:0000313|EMBL:BAL59164.1}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
Predicted ATPase rbh
SCNpilot_expt_500_p_scaffold_1831_7
Thermobaculum terrenum, Thermobaculum, Bacteria

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7732..8607
DNA (876bp) protein (292aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CCX0_THET1 rbh
NAD-dependent epimerase/dehydratase rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACZ42635.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
SCNpilot_expt_500_p_scaffold_1831_8
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8659..9705)
DNA (1047bp) protein (349aa)
Putative ribose operon repressor, rbsR id=4413313 bin=GWC2_Chloroflexi_73_18 species=unknown genus=Oceanimonas taxon_order=Aeromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
Tax=RBG_16_Gammaproteobacteria_66_13_curated
SCNpilot_expt_500_p_scaffold_1831_9
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(9759..11459)
DNA (1701bp) protein (567aa)
glycoside hydrolase family protein; K01198 xylan 1,4-beta-xylosidase [EC:3.2.1.37]
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI000363C25D
Glycoside hydrolase family 39 {ECO:0000313|EMBL:ACQ79795.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_500_p_scaffold_1831_10
Caldalkalibacillus thermarum, Caldalkalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(11500..12258)
DNA (759bp) protein (253aa)
2-deoxy-D-gluconate 3-dehydrogenase (EC:1.1.1.125); K00065 2-deoxy-D-gluconate 3-dehydrogenase [EC:1.1.1.125]
2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5LAT0_9BACI rbh
2-deoxy-D-gluconate 3-dehydrogenase {ECO:0000313|EMBL:EGL81469.1}; TaxID=986075 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Caldalkalibacillus.;" source="Caldalkalibacillus thermarum TA2.A1.;"
SCNpilot_expt_500_p_scaffold_1831_11
Bacillus hemicellulosilyticus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(12344..13174)
DNA (831bp) protein (277aa)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; EC=5.3.1.17 {ECO:0000256|HAMAP-Rule:MF_00687};; 5-keto-4-deoxyuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; DKI isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; TaxID=1236971 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus hemicellulosilyticus JCM 9152.;"
kduI; 5-keto-4-deoxyuronate isomerase (EC:5.3.1.17); K01815 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17] rbh
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5LAT1_9BACI rbh
SCNpilot_expt_500_p_scaffold_1831_12
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13748..14386
DNA (639bp) protein (213aa)
ABC-type polysaccharide transport system, permease component n=1 Tax=Clostridium termitidis CT1112 RepID=S0FTE2_9CLOT
ABC-type polysaccharide transport system, permease component {ECO:0000313|EMBL:EMS73601.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein
Displaying 12 items

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