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SCNpilot_expt_500_p_scaffold_2323

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_2323_1
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(2..814)
DNA (813bp) protein (271aa)
Ketopantoate reductase ApbA/PanE domain protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TUN0_9CHLR rbh
Ketopantoate reductase ApbA/PanE domain protein {ECO:0000313|EMBL:EFH84098.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
alpha/beta hydrolase fold protein
SCNpilot_expt_500_p_scaffold_2323_2
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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970..1563
DNA (594bp) protein (198aa)
Transcriptional regulator, TetR family n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TUN1_9CHLR
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EFH84099.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
tetR1; hypothetical protein
SCNpilot_expt_500_p_scaffold_2323_3
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1637..3964)
DNA (2328bp) protein (776aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46B94_METBF
Uncharacterized protein {ECO:0000313|EMBL:AKB58128.1}; TaxID=1434106 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 227.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_2323_4
Amycolatopsis orientalis, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4107..4394)
DNA (288bp) protein (96aa)
CsbD family protein n=1 Tax=Amycolatopsis orientalis HCCB10007 RepID=R4TCF0_AMYOR
CsbD family protein
CsbD family protein {ECO:0000313|EMBL:AGM08118.1}; TaxID=1156913 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis orientalis HCCB10007.;"
SCNpilot_expt_500_p_scaffold_2323_5
unknown

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4639..5685
DNA (1047bp) protein (349aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_2323_6
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5792..6565)
DNA (774bp) protein (258aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LUF7_CLOCD
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; K07668 two-component system, OmpR family, response regulator VicR
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AEV70605.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
SCNpilot_expt_500_p_scaffold_2323_7
Shewanella xiamenensis, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6916..7299
DNA (384bp) protein (128aa)
Response regulator n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1CWD2_MYXXD
Response regulator {ECO:0000313|EMBL:KEK28132.1}; TaxID=332186 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella xiamenensis.;"
response regulator
SCNpilot_expt_500_p_scaffold_2323_8
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(7312..8442)
DNA (1131bp) protein (377aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
DNA methylase N-4/N-6 domain protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NKK8_ROSCS rbh
DNA methylase N-4/N-6 domain-containing protein rbh
SCNpilot_expt_500_p_scaffold_2323_9
Pseudomonas balearica, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8645..9502
DNA (858bp) protein (286aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1123016 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas balearica DSM 6083.;"
murI; glutamate racemase (EC:5.1.1.3)
glutamate racemase n=1 Tax=Pseudomonas sp. PAMC 25886 RepID=UPI00028A219B
SCNpilot_expt_500_p_scaffold_2323_10
Lactococcus lactis, Lactococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(9517..9927)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Lactococcus lactis RepID=UPI00034C6702
ycfH; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK04358.1}; TaxID=272623 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus.;" source="Lactococcus lactis subsp. lactis (strain IL1403) (Streptococcus; lactis).;"
SCNpilot_expt_500_p_scaffold_2323_11
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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comp(10040..10840)
DNA (801bp) protein (267aa)
Transcriptional regulator, AraC family n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AXZ2_HERA2
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABX04958.1}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
SCNpilot_expt_500_p_scaffold_2323_12
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(10881..12158)
DNA (1278bp) protein (426aa)
Molybdopterin molybdochelatase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UPI4_ROSS1 rbh
molybdenum cofactor synthesis domain-containing protein rbh
Molybdopterin molybdochelatase {ECO:0000313|EMBL:ABQ88537.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
Displaying 12 items

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