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SCNpilot_expt_500_p_scaffold_3077

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_3077_1
unknown

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3..200
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_3077_2
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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221..1393
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W4D5_UNCMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ36758.2}; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50).;"
SCNpilot_expt_500_p_scaffold_3077_3
Desulfosporosinus sp. HMP52, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1397..2674)
DNA (1278bp) protein (426aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1487923 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. HMP52.;"
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3); K07642 two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] id=14633113 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_500_p_scaffold_3077_4
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

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comp(2680..3378)
DNA (699bp) protein (233aa)
OmpR family two-component response regulator id=1246502 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
baeR; DNA-binding transcriptional regulator BaeR; K07664 two-component system, OmpR family, response regulator BaeR
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
SCNpilot_expt_500_p_scaffold_3077_5
unknown

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comp(3505..4260)
DNA (756bp) protein (252aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_3077_6
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(4481..5806)
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS76_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:EAX47140.1}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_3077_7
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(5823..6764)
DNA (942bp) protein (314aa)
aldo/keto reductase; K00064 D-threo-aldose 1-dehydrogenase [EC:1.1.1.122] rbh
Aldo/keto reductase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U061_9CHLR rbh
Aldo/keto reductase {ECO:0000313|EMBL:EFH82201.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
SCNpilot_expt_500_p_scaffold_3077_8
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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7108..7557
DNA (450bp) protein (150aa)
Transcriptional regulator, MarR family n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EDS8_9CHLR
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CCF82840.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
MarR family transcriptional regulator
SCNpilot_expt_500_p_scaffold_3077_9
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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8187..10037
DNA (1851bp) protein (617aa)
Putative uncharacterized protein n=2 Tax=Chloroflexus RepID=A9WA42_CHLAA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABY36724.1}; Flags: Precursor;; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl).;"
SCNpilot_expt_500_p_scaffold_3077_10
unknown

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10378..12201
DNA (1824bp) protein (608aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_3077_11
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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12325..15297
DNA (2973bp) protein (991aa)
phosphoenolpyruvate carboxylase; K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31] rbh
Phosphoenolpyruvate carboxylase {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769}; Short=PEPC {ECO:0000256|HAMAP-Rule:MF_00595};; Short=PEPCase {ECO:0000256|HAMAP-Rule:MF_00595};; EC=4.1.1.31 {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769};; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
Phosphoenolpyruvate carboxylase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AXE9_HERA2 rbh
SCNpilot_expt_500_p_scaffold_3077_12
unknown

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15413..15979
DNA (567bp) protein (189aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_3077_13
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(16114..16800)
DNA (687bp) protein (229aa)
Thiamine pyrophosphokinase n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LRT8_TEPAE
Thiamine pyrophosphokinase
Thiamine pyrophosphokinase {ECO:0000313|EMBL:CCP25822.1}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
SCNpilot_expt_500_p_scaffold_3077_14
Deinococcus peraridilitoris, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(16980..18278)
DNA (1299bp) protein (433aa)
Arabinose efflux permease family protein n=1 Tax=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) RepID=K9ZZM8_DEIPD
arabinose efflux permease family protein
Arabinose efflux permease family protein {ECO:0000313|EMBL:AFZ66397.1}; TaxID=937777 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416; / KR-200).;"
SCNpilot_expt_500_p_scaffold_3077_15
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

18577..19398
DNA (822bp) protein (274aa)
fumarate lyase; K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
Fumarate hydratase class II n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CEI7_THET1
Displaying 15 items

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