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SCNpilot_expt_500_p_scaffold_1170

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Displaying 16 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1170_1
unknown

Not on your lists

comp(261..977)
DNA (717bp) protein (239aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1170_2
unknown

Not on your lists

1330..1494
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1170_3
Nephroselmis olivacea, Nephroselmis, Nephroselmidophyceae, Chlorophyta, Viridiplantae

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comp(2967..3686)
DNA (720bp) protein (240aa)
Putative site-specific DNA endonuclease n=1 Tax=Nephroselmis olivacea RepID=Q9TCC7_NEPOL
Putative site-specific DNA endonuclease {ECO:0000313|EMBL:AAF03170.1}; TaxID=31312 species="Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Nephroselmidophyceae; Nephroselmis.;" source="Nephroselmis olivacea (Green alga).;"
SCNpilot_expt_500_p_scaffold_1170_4
Nuclearia simplex, Nuclearia, Eukaryota

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6318..7085
DNA (768bp) protein (256aa)
Cytochrome c oxidase subunit 2 n=1 Tax=Nuclearia simplex RepID=M1JZS6_9EUKA rbh
Cytochrome c oxidase subunit 2 {ECO:0000256|RuleBase:RU000457}; TaxID=154970 species="Eukaryota; Nucleariidae and Fonticula group; Nucleariidae; Nuclearia.;" source="Nuclearia simplex.;"
cox2; Cox2; K02261 cytochrome c oxidase subunit 2
SCNpilot_expt_500_p_scaffold_1170_5
Aspergillus nidulans, Aspergillus, Eurotiales, Eurotiomycetidae, Ascomycota, Fungi

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7078..8595
DNA (1518bp) protein (506aa)
Intron-encoded DNA endonuclease I-AniI; COB intron protein; mRNA maturase bI1; Contains:; Truncated non-functional cytochrome b; Contains:; DNA endonuclease/RNA maturase I-AniI; EC=3.1.-.-;; Flags: Precursor;; TaxID=162425 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus.;" source="Emericella nidulans (Aspergillus nidulans).;"
Intron-encoded DNA endonuclease I-AniI n=1 Tax=Emericella nidulans RepID=ANI1_EMEND rbh
BI3; Bi3p; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit rbh
SCNpilot_expt_500_p_scaffold_1170_6
Parasitella parasitica, Parasitella, Mucorales, Fungi

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8639..9907
DNA (1269bp) protein (423aa)
AI4; Ai4p (EC:3.1.-.-); K02256 cytochrome c oxidase subunit 1 [EC:1.9.3.1]
Endonuclease, COB group I intron encoded n=1 Tax=Pichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) RepID=C7U017_PICSO
LAGLIDADG/HNH endonuclease {ECO:0000313|EMBL:AIO05738.1}; TaxID=35722 species="Eukaryota; Fungi; Fungi incertae sedis; Early diverging fungal lineages; Mucoromycotina; Mucorales; Mucorineae; Mucoraceae; Parasitella.;" source="Parasitella parasitica.;"
SCNpilot_expt_500_p_scaffold_1170_7
Nuclearia simplex, Nuclearia, Eukaryota

Not on your lists

10044..10334
DNA (291bp) protein (97aa)
Cytochrome b n=1 Tax=Nuclearia simplex RepID=M1K3K2_9EUKA
Cytochrome b {ECO:0000256|RuleBase:RU000300}; TaxID=154970 species="Eukaryota; Nucleariidae and Fonticula group; Nucleariidae; Nuclearia.;" source="Nuclearia simplex.;"
COB, COB1, CYTB; Cobp; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit
SCNpilot_expt_500_p_scaffold_1170_8
Nuclearia simplex, Nuclearia, Eukaryota

Not on your lists

comp(11377..12315)
DNA (939bp) protein (313aa)
NADH-ubiquinone oxidoreductase chain 1 {ECO:0000256|RuleBase:RU000473}; EC=1.6.5.3 {ECO:0000256|RuleBase:RU000473};; TaxID=154970 species="Eukaryota; Nucleariidae and Fonticula group; Nucleariidae; Nuclearia.;" source="Nuclearia simplex.;"
NADH-ubiquinone oxidoreductase chain 1; K03878 NADH-ubiquinone oxidoreductase chain 1 [EC:1.6.5.3]
NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Nuclearia simplex RepID=M1K3I4_9EUKA rbh
SCNpilot_expt_500_p_scaffold_1170_9
Cyanidiaceae sp. MX-AZ01, Cyanidiales, Bangiophyceae, Eukaryota

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comp(12318..13064)
DNA (747bp) protein (249aa)
ATP synthase A chain (protein 6); K02126 F-type H+-transporting ATPase subunit a [EC:3.6.3.14]
ATP synthase subunit a n=1 Tax=Coccomyxa subellipsoidea C-169 RepID=F1DPL8_9CHLO
ATP synthase subunit a {ECO:0000256|RuleBase:RU004450}; TaxID=1503164 species="Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; unclassified Cyanidiaceae.;" source="Cyanidiaceae sp. MX-AZ01.;"
SCNpilot_expt_500_p_scaffold_1170_10
unknown

Not on your lists

comp(13069..13359)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1170_11
unknown

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comp(13714..13866)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1170_12
unknown

Not on your lists

comp(14405..14590)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1170_13
Gelidium vagum, Gelidium, Gelidiales, Florideophyceae, Eukaryota

Not on your lists

comp(14766..15155)
DNA (390bp) protein (130aa)
NADH-ubiquinone oxidoreductase chain 3 {ECO:0000256|RuleBase:RU003640}; EC=1.6.5.3 {ECO:0000256|RuleBase:RU003640};; TaxID=35171 species="Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium.;" source="Gelidium vagum (Red alga).;"
NADH:ubiquinone oxidoreductase subunit A (EC:1.6.99.5); K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3]
NADH dehydrogenase subunit 3 n=1 Tax=Gelidium vagum RepID=V5JFS1_9FLOR
SCNpilot_expt_500_p_scaffold_1170_14
Rhodomonas salina, Rhodomonas, Pyrenomonadales, Cryptophyta, Eukaryota

Not on your lists

comp(15152..17146)
DNA (1995bp) protein (665aa)
NADH-ubiquinone oxidoreductase chain 5 {ECO:0000256|RuleBase:RU003404, ECO:0000256|SAAS:SAAS00061106}; EC=1.6.5.3 {ECO:0000256|RuleBase:RU003404, ECO:0000256|SAAS:SAAS00061108};; TaxID=52970 species="Eukaryota; Cryptophyta; Pyrenomonadales; Pyrenomonadaceae; Rhodomonas.;" source="Rhodomonas salina (Cryptomonas salina).;"
nad5, ndhF; nad5; K03883 NADH-ubiquinone oxidoreductase chain 5 [EC:1.6.5.3]
NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Rhodomonas salina RepID=Q9G8V7_RHDSA
SCNpilot_expt_500_p_scaffold_1170_15
Andalucia godoyi, Andalucia, Eukaryota

Not on your lists

comp(17151..17438)
DNA (288bp) protein (96aa)
NADH dehydrogenase subunit 4L {ECO:0000313|EMBL:AGH24017.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AGH24017.1};; TaxID=505711 species="Eukaryota; Jakobida; Andalucia.;" source="Andalucia godoyi (Flagellate).;"
NADH dehydrogenase subunit 4L n=1 Tax=Andalucia godoyi RepID=M4Q9C3_9EUKA
nad4L; NADH dehydrogenase subunit 4L
SCNpilot_expt_500_p_scaffold_1170_16
unknown

Not on your lists

comp(19254..19769)
DNA (516bp) protein (172aa)

This feature has no annotations

probably not a real protein, inside 16S. Rose Kantor (10/26/15)
Displaying 16 items

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