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SCNpilot_expt_500_p_scaffold_899

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_899_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..339
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037CB7BA
XRE family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_899_2
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

472..876
DNA (405bp) protein (135aa)
hypothetical protein id=12497053 bin=THIO_MID species=Methyloversatilis universalis genus=Methyloversatilis taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_500_p_scaffold_899_3
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

876..1583
DNA (708bp) protein (236aa)
hypothetical protein id=12497054 bin=THIO_MID species=Acidithiobacillus ferrooxidans genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_500_p_scaffold_899_4
unknown

Not on your lists

1583..1879
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_899_5
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1889..4945)
DNA (3057bp) protein (1019aa)
TraG domain-containing protein; K12056 conjugal transfer mating pair stabilization protein TraG id=12497060 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Conjugal transfer mating pair stabilization protein TraG {ECO:0000313|EMBL:EXI89972.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
TraG domain-containing protein; K12056 conjugal transfer mating pair stabilization protein TraG
SCNpilot_expt_500_p_scaffold_899_6
Acinetobacter johnsonii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4959..6395)
DNA (1437bp) protein (479aa)
TraH protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SGX6_ACIJO
TraH protein {ECO:0000313|EMBL:EEY94832.1}; TaxID=575586 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter johnsonii SH046.;"
TraH family protein; K12072 conjugative transfer pilus assembly protein TraH
SCNpilot_expt_500_p_scaffold_899_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6420..7310)
DNA (891bp) protein (297aa)
hypothetical protein id=12497062 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_899_8
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7307..7699)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7Z3_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER59409.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
SCNpilot_expt_500_p_scaffold_899_9
unknown

Not on your lists

comp(7702..8532)
DNA (831bp) protein (277aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_899_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8567..9871)
DNA (1305bp) protein (435aa)
traN; conjugal transfer mating pair stabilization protein TraN; K12058 conjugal transfer mating pair stabilization protein TraN id=12497065 bin=THIO_MID species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
traN; conjugal transfer mating pair stabilization protein TraN; K12058 conjugal transfer mating pair stabilization protein TraN rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_899_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9868..11043)
DNA (1176bp) protein (392aa)
hypothetical protein id=1311308 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_899_12
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11040..11825)
DNA (786bp) protein (262aa)
Type-F conjugative transfer system pilin assembly protein TrbC n=2 Tax=Burkholderia cenocepacia RepID=T0EEK9_9BURK
putative conjugative transfer protein; K12059 conjugal transfer pilus assembly protein TrbC
Type-F conjugative transfer system pilin assembly protein TrbC {ECO:0000313|EMBL:ERI28612.1}; TaxID=985077 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia BC7.;"
SCNpilot_expt_500_p_scaffold_899_13
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11788..12834)
DNA (1047bp) protein (349aa)
traU; hypothetical protein; K12060 conjugal transfer pilus assembly protein TraU id=12497068 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG22234.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
traU; hypothetical protein; K12060 conjugal transfer pilus assembly protein TraU
SCNpilot_expt_500_p_scaffold_899_14
Edwardsiella ictaluri, Edwardsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12822..13556)
DNA (735bp) protein (245aa)
hypothetical protein id=12497069 bin=THIO_MID species=Edwardsiella ictaluri genus=Edwardsiella taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR67577.1}; TaxID=634503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella.;" source="Edwardsiella ictaluri (strain 93-146).;"
SCNpilot_expt_500_p_scaffold_899_15
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13553..14188)
DNA (636bp) protein (212aa)
Membrane lipoprotein lipid attachment site n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W649_ACISJ
hypothetical protein; K12061 conjugal transfer pilus assembly protein TraW
Membrane lipoprotein lipid attachment site {ECO:0000313|EMBL:ABM41724.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_p_scaffold_899_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14175..14750)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035FC893
type IV secretory pathway protease TraF-like protein; K12062 conjugal transfer pilin signal peptidase TrbI
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_899_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14747..15211)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C7A3E
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_899_18
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15213..17804)
DNA (2592bp) protein (864aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A36F8
Conjugal transfer ATP-binding protein TraC {ECO:0000313|EMBL:EXI84478.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
traC; hypothetical protein; K12063 conjugal transfer ATP-binding protein TraC
SCNpilot_expt_500_p_scaffold_899_19
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17794..18351)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Thauera phenylacetica B4P RepID=N6YXM6_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO99021.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
type IV conjugative transfer system protein TraV; K12064 conjugal transfer pilus assembly protein TraV
SCNpilot_expt_500_p_scaffold_899_20
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18348..19121)
DNA (774bp) protein (258aa)
Thiol:disulfide interchange protein DsbC; K03981 thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
Thiol:disulfide interchange protein DsbC n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2FH70_BURVI
Putative thiol:disulfide interchange protein DsbC {ECO:0000313|EMBL:EXI80398.1}; Flags: Precursor;; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
SCNpilot_expt_500_p_scaffold_899_21
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19121..20398)
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000367097D
TraB pilus assembly {ECO:0000313|EMBL:BAO29695.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
TraB pilus assembly; K12065 conjugal transfer pilus assembly protein TraB
SCNpilot_expt_500_p_scaffold_899_22
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20395..21105)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GGJ8_ALIDK
Uncharacterized protein {ECO:0000313|EMBL:KGM38734.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
hypothetical protein; K12066 conjugal transfer pilus assembly protein TraK
SCNpilot_expt_500_p_scaffold_899_23
Burkholderiales bacterium 1_1_47, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21065..21667)
DNA (603bp) protein (201aa)
Type IV conjugative transfer system protein TraE n=1 Tax=Burkholderiales bacterium 1_1_47 RepID=D9Y4D0_9BURK
Type IV conjugative transfer system protein TraE {ECO:0000313|EMBL:EFL83826.1}; TaxID=469610 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium 1_1_47.;"
plasmid-like conjugative transfer protein TraE; K12067 conjugal transfer pilus assembly protein TraE
SCNpilot_expt_500_p_scaffold_899_24
Parasutterella excrementihominis CAG:233, Parasutterella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21664..21951)
DNA (288bp) protein (96aa)
Type IV conjugative transfer system protein TraL n=1 Tax=Parasutterella excrementihominis CAG:233 RepID=R5EBY2_9BURK
Type IV conjugative transfer system protein TraL {ECO:0000313|EMBL:CCX85611.1}; TaxID=1263099 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sutterellaceae; Parasutterella; environmental samples.;" source="Parasutterella excrementihominis CAG:233.;"
SCNpilot_expt_500_p_scaffold_899_25
unknown

Not on your lists

comp(21974..22273)
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_899_26
unknown

Not on your lists

comp(22342..22731)
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_899_27
Pseudoalteromonas tunicata, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22731..23306)
DNA (576bp) protein (192aa)
Outer membrane protein A n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CFH2_9GAMM
Outer membrane protein A {ECO:0000313|EMBL:EAR26510.1}; TaxID=87626 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas tunicata D2.;"
OmpA/MotB domain-containing protein
SCNpilot_expt_500_p_scaffold_899_28
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23308..23772)
DNA (465bp) protein (155aa)
Transglycosylase SLT domain protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NYG8_AROAE
Lytic transglycosylase {ECO:0000313|EMBL:KIF83732.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
transglycosylase
SCNpilot_expt_500_p_scaffold_899_29
unknown

Not on your lists

comp(23772..24029)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_899_30
unknown

Not on your lists

24556..24990
DNA (435bp) protein (145aa)
id=12497084 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
Displaying items 1-30 of 31 in total

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