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SCNpilot_expt_500_p_scaffold_1128_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1128_curated_1
Legionella oakridgensis, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..1976)
DNA (1974bp) protein (658aa)
putative Methionyl-tRNA formyltransferase (EC:2.1.2.9 5.1.1.11)
Putative Methionyl-tRNA formyltransferase n=1 Tax=Legionella pneumophila subsp. pneumophila RepID=I7HRP6_LEGPN
Non-ribosomal peptide synthetase modules-related protein {ECO:0000313|EMBL:AHE65861.1}; TaxID=1268635 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella oakridgensis ATCC 33761 = DSM 21215.;"
SCNpilot_expt_500_p_scaffold_1128_curated_2
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2074..3699)
DNA (1626bp) protein (542aa)
Putative Zn-dependent hydrolase of beta-lactamase fold protein n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9X6X9_9NOST
Uncharacterized protein {ECO:0000313|EMBL:AIK96255.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
uncharacterized LOC100204796
SCNpilot_expt_500_p_scaffold_1128_curated_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4132..4458)
DNA (327bp) protein (109aa)
transposase n=1 Tax=Rickettsia helvetica RepID=UPI000288DBA4
Transposase {ECO:0000313|EMBL:AIL13656.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
transposase
SCNpilot_expt_500_p_scaffold_1128_curated_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4626..4769)
DNA (144bp) protein (48aa)
Transposase {ECO:0000313|EMBL:AIL13935.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1128_curated_5
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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comp(5014..6198)
DNA (1185bp) protein (395aa)
Putative transcriptional regulator, GntR family n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AUK3_HERA2
GntR family transcriptional regulator
Putative transcriptional regulator, GntR family {ECO:0000313|EMBL:ABX04530.1}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
SCNpilot_expt_500_p_scaffold_1128_curated_6
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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comp(6191..7276)
DNA (1086bp) protein (362aa)
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:ABX04531.1}; EC=1.13.11.27 {ECO:0000313|EMBL:ABX04531.1};; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AUK4_HERA2
4-hydroxyphenylpyruvate dioxygenase
SCNpilot_expt_500_p_scaffold_1128_curated_7
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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7424..8383
DNA (960bp) protein (320aa)
Putative taurine catabolism dioxygenase n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WVG6_9NOST
Uncharacterized protein {ECO:0000313|EMBL:AHH99499.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
putative taurine catabolism dioxygenase
SCNpilot_expt_500_p_scaffold_1128_curated_8
Lyngbya aestuarii, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(8420..9166)
DNA (747bp) protein (249aa)
Linear gramicidin dehydrogenase LgrE {ECO:0000313|EMBL:ERT06762.1}; EC=1.1.-.- {ECO:0000313|EMBL:ERT06762.1};; TaxID=1348334 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya aestuarii BL J.;"
Linear gramicidin dehydrogenase LgrE n=1 Tax=Lyngbya aestuarii BL J RepID=U7QHJ4_9CYAN
thioesterase domain-containing protein
SCNpilot_expt_500_p_scaffold_1128_curated_9
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9358..11142
DNA (1785bp) protein (595aa)
Uncharacterized protein {ECO:0000313|EMBL:AIK96266.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
Multidrug resistance protein Atm1 id=4064194 bin=GWA2_TM6_36_9 species=GWA2_TM6_36_9 genus=GWA2_TM6_36_9 taxon_order=GWA2_TM6_36_9 taxon_class=GWA2_TM6_36_9 phylum=TM6 tax=GWA2_TM6_36_9 organism_group=TM6
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_500_p_scaffold_1128_curated_10
Polysphondylium pallidum, Polysphondylium, Dictyosteliida, Eukaryota

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11132..12253
DNA (1122bp) protein (374aa)
Hydroxyacid oxidase n=1 Tax=Polysphondylium pallidum RepID=D3BRV9_POLPA
Hydroxyacid oxidase {ECO:0000313|EMBL:EFA76141.1}; TaxID=13642 species="Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Polysphondylium.;" source="Polysphondylium pallidum (Cellular slime mold).;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1128_curated_11
unknown

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12350..12601
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1128_curated_12
Legionella massiliensis, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12661..13923)
DNA (1263bp) protein (421aa)
MFS transporter n=1 Tax=Fluoribacter dumoffii RepID=UPI0002E49DA1
Nicotinate degradation protein T {ECO:0000313|EMBL:CDZ76940.1}; Putative metabolite transport protein NicT {ECO:0000313|EMBL:CEE12678.1}; TaxID=1034943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella massiliensis.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_1128_curated_13
unknown

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14090..15559
DNA (1470bp) protein (490aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1128_curated_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15614..19027)
DNA (3414bp) protein (1138aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12605.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
conjugal transfer relaxase TraA id=4935065 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
traA; conjugal transfer protein TraA
SCNpilot_expt_500_p_scaffold_1128_curated_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19289..19537
DNA (249bp) protein (83aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12603.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1128_curated_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19542..19865
DNA (324bp) protein (108aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12602.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein COdytL_12964 id=4935063 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
SCNpilot_expt_500_p_scaffold_1128_curated_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19955..20146)
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003753C8B
Uncharacterized protein {ECO:0000313|EMBL:AIL13473.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1128_curated_18
Candidatus Rickettsia asemboensis, Rickettsia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21221..21784)
DNA (564bp) protein (188aa)
Predicted ATPase n=1 Tax=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) RepID=Q4UK07_RICFE
ATPase {ECO:0000313|EMBL:KIJ88404.1}; TaxID=1068590 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group.;" source="Candidatus Rickettsia asemboensis.;"
ATPase; K07133
Displaying 18 items

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