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SCNpilot_expt_500_p_scaffold_510_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_510_curated_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

187..1473
DNA (1287bp) protein (429aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13127.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_510_curated_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1686..1949)
DNA (264bp) protein (88aa)
USG protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B56E43
Uncharacterized protein {ECO:0000313|EMBL:AIL13263.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
usg-like family protein
SCNpilot_expt_500_p_scaffold_510_curated_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2015..2371)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida CSV86 RepID=L1M5Q8_PSEPU
Uncharacterized protein {ECO:0000313|EMBL:AIL13264.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_510_curated_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2381..3148)
DNA (768bp) protein (256aa)
cytochrome C n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B6F107
Cytochrome C {ECO:0000313|EMBL:AIL13265.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Cytochrome c1, heme protein
SCNpilot_expt_500_p_scaffold_510_curated_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3145..4386)
DNA (1242bp) protein (414aa)
Cytochrome b n=1 Tax=Oceanibaculum indicum P24 RepID=K2JH31_9PROT
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
petB; Cytochrome b/b6-like protein
SCNpilot_expt_500_p_scaffold_510_curated_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4396..4962)
DNA (567bp) protein (189aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=uncultured bacterium RepID=K2DV42_9BACT
petA; Ubiquinol-cytochrome C reductase, iron-sulfur subunit
SCNpilot_expt_500_p_scaffold_510_curated_7
unknown

Not on your lists

5429..5926
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_510_curated_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6076..6576)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B433
Cytoplasmic protein {ECO:0000313|EMBL:AIL12804.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_510_curated_9
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6566..6994)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B176
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB74474.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
SCNpilot_expt_500_p_scaffold_510_curated_10
unknown

Not on your lists

7237..7923
DNA (687bp) protein (229aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_510_curated_11
unknown

Not on your lists

8982..9950
DNA (969bp) protein (323aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_510_curated_12
unknown

Not on your lists

9992..10306
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_510_curated_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11562..11882)
DNA (321bp) protein (107aa)
Glutaredoxin n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XNP3_HIRBI
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
glutaredoxin-like protein; K07390 monothiol glutaredoxin
SCNpilot_expt_500_p_scaffold_510_curated_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11866..12123)
DNA (258bp) protein (86aa)
ATP-binding protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036F4774
ATP-binding protein {ECO:0000313|EMBL:AIL13275.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
BolA-like protein
SCNpilot_expt_500_p_scaffold_510_curated_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12445..14340
DNA (1896bp) protein (632aa)
Uncharacterized protein ImpC n=1 Tax=gamma proteobacterium IMCC1989 RepID=F3LHH4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AIL13276.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Uncharacterized protein ImpC
SCNpilot_expt_500_p_scaffold_510_curated_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14395..14979
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B713
Uncharacterized protein {ECO:0000313|EMBL:AIL13277.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_510_curated_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14987..15493
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FHR3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL13278.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_510_curated_18
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15568..17562
DNA (1995bp) protein (665aa)
excinuclease ABC subunit B n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B6A696
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
uvrB; excinuclease ABC subunit B
SCNpilot_expt_500_p_scaffold_510_curated_19
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17875..18426
DNA (552bp) protein (184aa)
Iron transporter {ECO:0000313|EMBL:AIL13280.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Putative iron-sulfur cluster scaffold,NifU-like id=4364405 bin=GWC2_Alphaproteobacteria_42_16 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
NifU-like protein
SCNpilot_expt_500_p_scaffold_510_curated_20
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18464..19372
DNA (909bp) protein (303aa)
BAX protein id=4364460 bin=GWC2_Alphaproteobacteria_42_16 species=Shewanella woodyi genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_expt_500_p_scaffold_510_curated_21
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19428..20690
DNA (1263bp) protein (421aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Tyrosine--tRNA ligase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JTQ3_9PROT
tyrS; tyrosyl-tRNA synthetase
SCNpilot_expt_500_p_scaffold_510_curated_22
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20788..21537
DNA (750bp) protein (250aa)
electron transfer flavoprotein subunit beta n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00030305BF
Uncharacterized protein {ECO:0000313|EMBL:AIL13282.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit
SCNpilot_expt_500_p_scaffold_510_curated_23
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21538..22488
DNA (951bp) protein (317aa)
Electron transfer flavoprotein, alpha subunit n=1 Tax=Beggiatoa alba B18LD RepID=I3CHS2_9GAMM
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:AIL13283.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit
SCNpilot_expt_500_p_scaffold_510_curated_24
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22559..22804
DNA (246bp) protein (82aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
exodeoxyribonuclease VII small subunit n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B467
xseB; Exonuclease VII small subunit
SCNpilot_expt_500_p_scaffold_510_curated_25
Acetobacter pomorum, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22819..23709
DNA (891bp) protein (297aa)
ispA; geranyltranstransferase (EC:2.5.1.10)
Geranyltranstransferase n=1 Tax=Acetobacter pomorum DM001 RepID=F1YW08_9PROT
Geranyltranstransferase {ECO:0000313|EMBL:EGE47001.1}; TaxID=945681 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter pomorum DM001.;"
SCNpilot_expt_500_p_scaffold_510_curated_26
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23706..25064)
DNA (1359bp) protein (453aa)
Acetyl-CoA carboxylase {ECO:0000313|EMBL:AIL13287.1}; EC=6.4.1.2 {ECO:0000313|EMBL:AIL13287.1};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
accC; biotin carboxylase (EC:6.3.4.14); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LDN0_9PROT
SCNpilot_expt_500_p_scaffold_510_curated_27
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25070..25534)
DNA (465bp) protein (155aa)
Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G8V0_9BRAD
Acetyl-CoA carboxylase {ECO:0000313|EMBL:AIL13288.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
SCNpilot_expt_500_p_scaffold_510_curated_28
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25664..28951)
DNA (3288bp) protein (1096aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ATP-dependent exoDNAse beta subunit id=3710583 bin=GWC2_Alphaproteobacteria_42_16 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
ATP-dependent exoDNAse beta subunit
SCNpilot_expt_500_p_scaffold_510_curated_29
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28936..31596)
DNA (2661bp) protein (887aa)
Putative double-strand break repair protein, AddB-like protein (Fragment) n=1 Tax=Oceanibaculum indicum P24 RepID=K2IDM7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL13290.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_510_curated_30
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31589..32056)
DNA (468bp) protein (156aa)
ATPase or kinase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TYS1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL13291.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ATPase or kinase; K06925 UPF0079 ATP-binding protein
Displaying items 1-30 of 38 in total

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