ggKbase home page

SCNpilot_expt_500_p_scaffold_413_curated

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_413_curated_1
unknown

Not on your lists

697..1104
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_413_curated_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1271..1930
DNA (660bp) protein (220aa)
Uncharacterized protein n=2 Tax=Lawsonia intracellularis RepID=M1GJU1_LAWIN
Membrane protein {ECO:0000313|EMBL:AIL12642.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K09125 hypothetical protein
SCNpilot_expt_500_p_scaffold_413_curated_3
Orientia chuto, Orientia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1927..3018
DNA (1092bp) protein (364aa)
carboxylic ester hydrolase n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225A8E2
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:KJV55110.1}; TaxID=1359168 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Orientia.;" source="Orientia chuto str. Fuller.;"
platelet-activating factor acetylhydrolase plasma/intracellular isoform II
SCNpilot_expt_500_p_scaffold_413_curated_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3034..4047)
DNA (1014bp) protein (338aa)
Microcin C7 self-immunity protein n=1 Tax=Bdellovibrio exovorus JSS RepID=M4VC22_9DELT
Uncharacterized protein {ECO:0000313|EMBL:AIL13401.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
microcin C7 self-immunity protein
SCNpilot_expt_500_p_scaffold_413_curated_5
unknown

Not on your lists

4150..4308
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_413_curated_6
Rickettsiales bacterium Ac37b, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4335..5129
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Rickettsia helvetica RepID=UPI00028A0CAB
Uncharacterized protein {ECO:0000313|EMBL:AIL65406.1}; TaxID=1528098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales.;" source="Rickettsiales bacterium Ac37b.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_413_curated_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5244..6245
DNA (1002bp) protein (334aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13400.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Transporter, drug/metabolite exporter family id=4896244 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Aeromonas taxon_order=Aeromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
SCNpilot_expt_500_p_scaffold_413_curated_8
unknown

Not on your lists

6455..6883
DNA (429bp) protein (143aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_413_curated_9
unknown

Not on your lists

6873..7370
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_413_curated_10
unknown

Not on your lists

comp(7565..8053)
DNA (489bp) protein (163aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_413_curated_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8231..10903)
DNA (2673bp) protein (891aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
acnA; Aconitase; K01681 aconitate hydratase 1 [EC:4.2.1.3]
aconitate hydratase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B55C8C
SCNpilot_expt_500_p_scaffold_413_curated_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10971..11708)
DNA (738bp) protein (246aa)
exodeoxyribonuclease III; K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Exodeoxyribonuclease III {ECO:0000313|EMBL:AIL13397.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
exodeoxyribonuclease III Xth id=3291438 bin=GWA1_Alphaproteobacteria_45_9 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
SCNpilot_expt_500_p_scaffold_413_curated_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11754..12140)
DNA (387bp) protein (129aa)
heme biosynthesis protein HemY n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B78471
Uncharacterized protein {ECO:0000313|EMBL:AIL13396.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Fe-S cluster assembly scaffold protein
SCNpilot_expt_500_p_scaffold_413_curated_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12246..13103
DNA (858bp) protein (286aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13395.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_413_curated_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13114..13788
DNA (675bp) protein (225aa)
Peptidase M50 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QN56_NITHX
Uncharacterized protein {ECO:0000313|EMBL:AIL13394.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
peptidase M50
SCNpilot_expt_500_p_scaffold_413_curated_16
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13806..14027
DNA (222bp) protein (74aa)
Sec-independent protein translocase protein TatA n=3 Tax=Magnetospirillum gryphiswaldense RepID=A4U1L0_9PROT
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
tatA; twin-arginine translocation protein TatA; K03116 sec-independent protein translocase protein TatA
SCNpilot_expt_500_p_scaffold_413_curated_17
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14028..14330
DNA (303bp) protein (101aa)
Sec-independent protein translocase protein TatB n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PCD6_9SPHN
Sec-independent protein translocase protein TatB {ECO:0000256|HAMAP-Rule:MF_00237, ECO:0000256|SAAS:SAAS00028234}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
sec-independent protein translocase protein TatB; K03117 sec-independent protein translocase protein TatB
SCNpilot_expt_500_p_scaffold_413_curated_18
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14311..15072
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003695EB3
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
tatC; TatABCE protein translocation system subunit
SCNpilot_expt_500_p_scaffold_413_curated_19
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15059..16342
DNA (1284bp) protein (428aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
serS; seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11]
Serine--tRNA ligase n=1 Tax=Brucella sp. BO2 RepID=E2PJI0_9RHIZ
SCNpilot_expt_500_p_scaffold_413_curated_20
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16339..17118
DNA (780bp) protein (260aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
5'-nucleotidase SurE n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AQS4_AZOBR
surE; 5'-nucleotidase
SCNpilot_expt_500_p_scaffold_413_curated_21
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17120..18202
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039DA234
Membrane protein related to metalloendopeptidase {ECO:0000313|EMBL:CCG41070.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
peptidase M23B
SCNpilot_expt_500_p_scaffold_413_curated_22
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18283..18747
DNA (465bp) protein (155aa)
Preprotein translocase subunit YajC n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W4A6_MAGSA
Uncharacterized protein {ECO:0000313|EMBL:AIL13391.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
SCNpilot_expt_500_p_scaffold_413_curated_23
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18756..20336
DNA (1581bp) protein (527aa)
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Preprotein translocase subunit SecD id=4468765 bin=GWC2_Alphaproteobacteria_42_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
secD; preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD
SCNpilot_expt_500_p_scaffold_413_curated_24
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20352..21269
DNA (918bp) protein (306aa)
Protein-export membrane protein SecF n=1 Tax=uncultured bacterium RepID=K2EID3_9BACT
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
protein-export membrane protein SecD; K12257 SecD/SecF fusion protein
SCNpilot_expt_500_p_scaffold_413_curated_25
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21273..22145
DNA (873bp) protein (291aa)
HAD family hydrolase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B4C02F
Uncharacterized protein {ECO:0000313|EMBL:AIL13388.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
putative sugar phosphatase (HAD superfamily)
SCNpilot_expt_500_p_scaffold_413_curated_26
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22179..23447
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J1P5_9PROT
Membrane protein {ECO:0000313|EMBL:AIL13387.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Co2 transporter containing CBS domains
SCNpilot_expt_500_p_scaffold_413_curated_27
Thalassospira permensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23453..23776
DNA (324bp) protein (108aa)
BolA family protein n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2L778_9PROT
BolA family transcriptional regulator {ECO:0000313|EMBL:KEO55863.1}; TaxID=1353532 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira permensis NBRC 106175.;"
BolA family protein; K05527 BolA protein
SCNpilot_expt_500_p_scaffold_413_curated_28
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23780..24340
DNA (561bp) protein (187aa)
DnaJ-class molecular chaperone n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W0A7_MAGSA
Uncharacterized protein {ECO:0000313|EMBL:AIL13386.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
DnaJ-class molecular chaperone
SCNpilot_expt_500_p_scaffold_413_curated_29
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24366..24797)
DNA (432bp) protein (144aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13385.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_413_curated_30
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24938..25861
DNA (924bp) protein (308aa)
rsbK; Ribokinase; K00852 ribokinase [EC:2.7.1.15]
Ribokinase n=1 Tax=uncultured bacterium RepID=K2EIU7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL13384.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Displaying items 1-30 of 48 in total

View Taxonomy