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SCNpilot_expt_500_p_scaffold_1077_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1077_curated_1
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(100..693)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B72D
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_expt_500_p_scaffold_1077_curated_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(932..1690)
DNA (759bp) protein (253aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12306.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein COdytL_05942 id=3850388 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein
SCNpilot_expt_500_p_scaffold_1077_curated_3
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1656..2348)
DNA (693bp) protein (231aa)
Putative uncharacterized protein id=3850385 bin=GWC2_Alphaproteobacteria_42_16 species=Rhizobium etli genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
prepilin-type N-terminal cleavage/methylation domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_expt_500_p_scaffold_1077_curated_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2841..3473
DNA (633bp) protein (211aa)
3''''-5'''' exonuclease n=1 Tax=Bartonella rattaustraliani RepID=UPI00031F83AB
3'-5' exonuclease {ECO:0000313|EMBL:AIL12307.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
putative 3'-5' exonuclease
SCNpilot_expt_500_p_scaffold_1077_curated_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3498..4523
DNA (1026bp) protein (342aa)
kdsD; arabinose5-phosphate isomerase KdsD (EC:5.3.1.13)
Sugar phosphate Isomerase n=1 Tax=uncultured bacterium RepID=C5JBK2_9BACT
D-arabinose 5-phosphate {ECO:0000313|EMBL:AIL12308.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1077_curated_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4541..5227
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JNM0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL12309.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
SCNpilot_expt_500_p_scaffold_1077_curated_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5217..5885
DNA (669bp) protein (223aa)
OstA-like family protein n=1 Tax=uncultured bacterium RepID=C5JBK0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL12310.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K09774 lipopolysaccharide export system protein LptA
SCNpilot_expt_500_p_scaffold_1077_curated_8
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5897..6655
DNA (759bp) protein (253aa)
ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter, ATP-binding protein, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IW90_RHOCS
ABC transporter, ATP-binding protein, putative {ECO:0000313|EMBL:ACJ00564.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_500_p_scaffold_1077_curated_9
unknown

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6742..9576
DNA (2835bp) protein (945aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1077_curated_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9601..9801)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPK3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61844.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_p_scaffold_1077_curated_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9818..10423)
DNA (606bp) protein (202aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
gmk; guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8]
Guanylate kinase n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=KGUA_MAGSA
SCNpilot_expt_500_p_scaffold_1077_curated_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10739..11962
DNA (1224bp) protein (408aa)
bicyclomycin resistance protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225C1E7
Uncharacterized protein {ECO:0000313|EMBL:AIL12313.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Bicyclomycin resistance protein
SCNpilot_expt_500_p_scaffold_1077_curated_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11983..13296
DNA (1314bp) protein (438aa)
Lysine/cadaverine antiporter membrane protein CadB n=1 Tax=Patulibacter medicamentivorans RepID=H0E1B0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:AIL12314.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
adiC-B; arginine/agmatine antiporter; K03759 arginine:agmatine antiporter
SCNpilot_expt_500_p_scaffold_1077_curated_14
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13336..14679
DNA (1344bp) protein (448aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
exonuclease VII large subunit; K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 large subunit n=1 Tax=uncultured bacterium RepID=K2DTR1_9BACT
SCNpilot_expt_500_p_scaffold_1077_curated_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14847..15485
DNA (639bp) protein (213aa)
Peptidase S16 lon protein n=1 Tax=uncultured bacterium RepID=K1ZY78_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL12316.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
peptidase S16, lon-like; K07157
SCNpilot_expt_500_p_scaffold_1077_curated_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15497..15682
DNA (186bp) protein (62aa)
UPF0434 protein P24_03271 n=1 Tax=Oceanibaculum indicum P24 RepID=K2JST3_9PROT
UPF0434 protein IM40_00355 {ECO:0000256|HAMAP-Rule:MF_01187}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K09791 hypothetical protein
SCNpilot_expt_500_p_scaffold_1077_curated_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15669..16310)
DNA (642bp) protein (214aa)
heme ABC transporter permease n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B79D5C
Uncharacterized protein {ECO:0000313|EMBL:AIL12318.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
heme exporter protein CcmB
SCNpilot_expt_500_p_scaffold_1077_curated_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16304..16966)
DNA (663bp) protein (221aa)
heme ABC exporter, ATP-binding protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41]
Cytochrome c biogenesis ATP-binding export protein CcmA n=1 Tax=Serratia sp. DD3 PF9_9ENTR">RepID=V5BPF9_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:AIL12319.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1077_curated_19
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16966..17379)
DNA (414bp) protein (138aa)
mutator MutT protein; K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-]
Mutator MutT protein n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XPX3_HIRBI
Uncharacterized protein {ECO:0000313|EMBL:AIL12320.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1077_curated_20
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17369..18103)
DNA (735bp) protein (245aa)
Methyltransferase small protein n=1 Tax=uncultured bacterium RepID=K2DU56_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL12321.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
conserved protein of unknown function; methyltransferase domain
SCNpilot_expt_500_p_scaffold_1077_curated_21
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18216..19238
DNA (1023bp) protein (341aa)
geranylgeranyl pyrophosphate synthase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90]
Polyprenyl synthetase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TXB8_9PROT
Farnesyltranstransferase {ECO:0000313|EMBL:AIL12322.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1077_curated_22
unknown

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comp(19379..19750)
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1077_curated_23
R_Alphaproteobacteria_40_19, Alphaproteobacteria, Proteobacteria, Bacteria

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19989..21392
DNA (1404bp) protein (468aa)
phosphomannomutase (EC:5.4.2.8); K01840 phosphomannomutase [EC:5.4.2.8]
Phosphomannomutase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BUL4_GRABC
Tax=RIFCSPLOWO2_02_FULL_Alphaproteobacteria_40_19_curated
SCNpilot_expt_500_p_scaffold_1077_curated_24
unknown

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comp(21376..21597)
DNA (222bp) protein (74aa)

This feature has no annotations

Displaying 24 items

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