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scnpilot_expt_750_bf_scaffold_2257

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2257_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..221)
DNA (219bp) protein (73aa)
NADH-quinone oxidoreductase subunit A {ECO:0000255|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000255|HAMAP-Rule:MF_01394}; NDH-1 subunit
NADH:ubiquinone oxidoreductase subunit A n=1 Tax=Curvibacter lanceolatus RepID=UPI00036EFA0B
NADH-ubiquinone/plastoquinone oxidoreductase subunit 3
scnpilot_expt_750_bf_scaffold_2257_trna_1
unknown

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comp(284..365)
DNA (82bp)
transferRNA
scnpilot_expt_750_bf_scaffold_2257_2
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(493..933)
DNA (441bp) protein (147aa)
Candidate preprotein translocase, subunit SecG n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y3T8_RAMTT
preprotein translocase subunit SecG
Candidate preprotein translocase, subunit SecG {ECO:0000313|EMBL:AEG93745.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source
scnpilot_expt_750_bf_scaffold_2257_3
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(974..1726)
DNA (753bp) protein (251aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=GWA2_Curvibacter_64_110_curated
tpiA; triosephosphate isomerase (EC:5.3.1.1)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00036054E8 rbh
scnpilot_expt_750_bf_scaffold_2257_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1723..2742)
DNA (1020bp) protein (340aa)
NADPH quinone oxidoreductase n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002F1DE91
NAD(P)h quinone oxidoreductase
NAD(P)H quinone oxidoreductase, PIG3 family {ECO:0000313|EMBL:ADU38200.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
scnpilot_expt_750_bf_scaffold_2257_5
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2803..5097)
DNA (2295bp) protein (765aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000255|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000255|HAMAP-Rule:MF_01595}; Short=PNPase
Polyribonucleotide nucleotidyltransferase n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=PNP_ACIAC
polynucleotide phosphorylase/polyadenylase
scnpilot_expt_750_bf_scaffold_2257_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5313..5579)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 id=1274305 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=GWE1_Burkholderiales_65_30_curated
rpsO; 30S ribosomal protein S15
scnpilot_expt_750_bf_scaffold_2257_7
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5701..6261)
DNA (561bp) protein (187aa)
Rhodanese-like protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6ZCV5_9RHOO
rhodanese-like protein
Tax=BJP_IG2103_Rhodocyclales_63_50
scnpilot_expt_750_bf_scaffold_2257_8
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6364..6747)
DNA (384bp) protein (128aa)
speE; spermidine synthase (EC:2.5.1.16)
Spermidine synthase n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=SPEE_NITEU
Polyamine aminopropyltransferase {ECO:0000255|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000255|HAMAP-Rule:MF_00198}; Short=PAPT {ECO:0000255|HAMAP-Rule:MF_00198};; Spermidine synth
Displaying 9 items

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