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scnpilot_expt_750_bf_scaffold_2547

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2547_1
RIFOXYD2_FULL_Sideroxydans_59_7_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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1..150
DNA (150bp) protein (50aa)
50S ribosomal protein L14 n=3 Tax=Rhodanobacter RepID=I4WKS3_9GAMM
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFOXYD2_FULL_Sideroxydans_59_7_curated
LSU ribosomal protein L14P
scnpilot_expt_750_bf_scaffold_2547_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


166..480
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1 Tax=Rhodanobacter denitrificans RepID=I4WKS4_9GAMM
ribosomal protein L24, bacterial/organelle
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobac
scnpilot_expt_750_bf_scaffold_2547_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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492..1031
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VM83_9GAMM rbh
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobac
50S ribosomal protein L5
scnpilot_expt_750_bf_scaffold_2547_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1095..1400
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VM84_9GAMM
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanoba
ribosomal protein S14
scnpilot_expt_750_bf_scaffold_2547_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1625..2020
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ51_9GAMM
ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobac
scnpilot_expt_750_bf_scaffold_2547_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2032..2559
DNA (528bp) protein (176aa)
50S ribosomal protein L6 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ50_9GAMM rbh
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhod
LSU ribosomal protein L6P
scnpilot_expt_750_bf_scaffold_2547_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2662..3015
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Rhodanobacter denitrificans RepID=I4WKS9_9GAMM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanoba
LSU ribosomal protein L18P
scnpilot_expt_750_bf_scaffold_2547_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3167..3676
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNK5_9GAMM rbh
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhod
30S ribosomal protein S5
scnpilot_expt_750_bf_scaffold_2547_9
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3669..3794
DNA (126bp) protein (42aa)
50S ribosomal protein L30 n=1 Tax=Rhodanobacter denitrificans RepID=I4WKT1_9GAMM
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lute
LSU ribosomal protein L30P
scnpilot_expt_750_bf_scaffold_2547_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3800..4231
DNA (432bp) protein (144aa)
50S ribosomal protein L15 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNK7_9GAMM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rho
50S ribosomal protein L15
scnpilot_expt_750_bf_scaffold_2547_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4236..5450
DNA (1215bp) protein (405aa)
Protein translocase subunit SecY n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VM91_9GAMM rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadace
preprotein translocase, SecY subunit
scnpilot_expt_750_bf_scaffold_2547_12
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5534..5890
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=1 Tax=Dyella japonica RepID=UPI0002E572E6
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangning
scnpilot_expt_750_bf_scaffold_2547_13
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5903..6289
DNA (387bp) protein (129aa)
30S ribosomal protein S11 n=3 Tax=Rhodanobacter RepID=I4WKT5_9GAMM
SSU ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter
scnpilot_expt_750_bf_scaffold_2547_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6302..6928
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=2 Tax=Rhodanobacter RepID=M4NE15_9GAMM
SSU ribosomal protein S4P
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobact
scnpilot_expt_750_bf_scaffold_2547_15
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6944..7942
DNA (999bp) protein (333aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNL2_9GAMM
scnpilot_expt_750_bf_scaffold_2547_16
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8036..8464
DNA (429bp) protein (143aa)
50S ribosomal protein L17 n=1 Tax=Dyella ginsengisoli RepID=UPI00036F5379
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lute
50S ribosomal protein L17
scnpilot_expt_750_bf_scaffold_2547_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8461..9012
DNA (552bp) protein (184aa)
Disulfide bond formation protein B n=1 Tax=Rhodanobacter denitrificans RepID=M4NBX2_9GAMM
disulfide bond formation protein DsbB
Disulfide bond formation protein B {ECO:0000256|HAMAP-Rule:MF_00286}; Disulfide oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00286}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gam
scnpilot_expt_750_bf_scaffold_2547_18
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9015..10406
DNA (1392bp) protein (464aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WKU0_9GAMM
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:KGI77421.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" sou
phospho-2-dehydro-3-deoxyheptonate aldolase
scnpilot_expt_750_bf_scaffold_2547_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10428..10934)
DNA (507bp) protein (169aa)
G:T/U mismatch-specific DNA glycosylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ32_9GAMM
G:T/U mismatch-specific DNA glycosylase {ECO:0000313|EMBL:EIL92473.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source=
glycosylase
scnpilot_expt_750_bf_scaffold_2547_20
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11025..12032
DNA (1008bp) protein (336aa)
Membrane protein containing RDD domain protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0YN25_9ZZZZ
RDD domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
transporter
scnpilot_expt_750_bf_scaffold_2547_21
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12035..13366)
DNA (1332bp) protein (444aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036263AA rbh
porin
Porin {ECO:0000313|EMBL:AHX13934.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_expt_750_bf_scaffold_2547_22
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13665..15152)
DNA (1488bp) protein (496aa)
GTP-binding protein TypA/BipA n=2 Tax=mine drainage metagenome RepID=T1CJR0_9ZZZZ
GTP-binding protein TypA {ECO:0000313|EMBL:KGI77378.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas
typA; probable GTP-BINDING PROTEIN/ELONGATION FACTOR
scnpilot_expt_750_bf_scaffold_2547_23
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15773..15964)
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002F04112
Branched-chain amino acid transport system permease protein LivM {ECO:0000313|EMBL:EPR75995.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="
scnpilot_expt_750_bf_scaffold_2547_24
actinobacterium acAcidi, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16151..16555
DNA (405bp) protein (135aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZYE4_9ACTN
Displaying 24 items

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