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scnpilot_expt_750_bf_scaffold_1654

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1654_1
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..683
DNA (681bp) protein (227aa)
Acetolactate synthase, large subunit, biosynthetic type n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5I6H7_9ACTO
thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase
Tax=BJP_08E140C01_Xanthomonadales_64_42
scnpilot_expt_750_bf_scaffold_1654_2
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(755..1000)
DNA (246bp) protein (82aa)
Tax=RBG_13_Chloroflexi_66_10_curated
scnpilot_expt_750_bf_scaffold_1654_3
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1204..1524
DNA (321bp) protein (107aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizo
sucD3; succinyl-CoA ligase [ADP-forming] subunit alpha (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5J9_9BRAD
scnpilot_expt_750_bf_scaffold_1654_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1540..2370)
DNA (831bp) protein (277aa)
Acetate operon repressor n=2 Tax=Oligotropha carboxidovorans RepID=B6JE42_OLICO rbh
iclR; acetate operon repressor
Acetate operon repressor {ECO:0000313|EMBL:AEI06214.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxid
scnpilot_expt_750_bf_scaffold_1654_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2570..4363
DNA (1794bp) protein (598aa)
gcl; glyoxylate carboligase Gcl (EC:4.1.1.47)
Glyoxylate carboligase Gcl {ECO:0000313|EMBL:AEI06215.1}; EC=4.1.1.47 {ECO:0000313|EMBL:AEI06215.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiacea
Glyoxylate carboligase n=2 Tax=Oligotropha carboxidovorans RepID=B6JE41_OLICO rbh
scnpilot_expt_750_bf_scaffold_1654_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4415..5185
DNA (771bp) protein (257aa)
hyi; hydroxypyruvate isomerase (EC:5.3.1.22)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobia
Hydroxypyruvate isomerase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NR11_AFIFE rbh
scnpilot_expt_750_bf_scaffold_1654_7
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5377..6075
DNA (699bp) protein (233aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
2-hydroxy-3-oxopropionate reductase GlxR {ECO:0000313|EMBL:AEI06217.1}; EC=1.1.1.60 {ECO:0000313|EMBL:AEI06217.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Br
2-hydroxy-3-oxopropionate reductase n=2 Tax=Oligotropha carboxidovorans RepID=B6JE39_OLICO rbh
scnpilot_expt_750_bf_scaffold_1654_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6149..7171
DNA (1023bp) protein (341aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhi
2-dehydropantoate 2-reductase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5K5_9BRAD rbh
putative 2-dehydropantoate 2-reductase
scnpilot_expt_750_bf_scaffold_1654_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7326..8198
DNA (873bp) protein (291aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afip
ttuE; pyruvate kinase TtuE (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJL0_AFIFE rbh
scnpilot_expt_750_bf_scaffold_1654_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8329..8622
DNA (294bp) protein (98aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afip
ttuE; pyruvate kinase TtuE (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJL0_AFIFE
scnpilot_expt_750_bf_scaffold_1654_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8649..9422
DNA (774bp) protein (258aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5K7_9BRAD rbh
Ureidoglycolate lyase {ECO:0000313|EMBL:CEG08426.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch dise
fumarylacetoacetate
scnpilot_expt_750_bf_scaffold_1654_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9579..10337)
DNA (759bp) protein (253aa)
Transcriptional regulator, GntR family n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JE35_OLICO rbh
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AEI06221.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligot
scnpilot_expt_750_bf_scaffold_1654_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10487..11395)
DNA (909bp) protein (303aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobi
sucD4; succinyl-CoA ligase [ADP-forming] subunit alpha (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5K9_9BRAD rbh
scnpilot_expt_750_bf_scaffold_1654_14
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11400..12596)
DNA (1197bp) protein (399aa)
sucC3; succinyl-CoA ligase [ADP-forming] subunit beta (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000255|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000255|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000255|HAMAP-Rule:MF_00558};
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5L0_9BRAD rbh
scnpilot_expt_750_bf_scaffold_1654_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12609..13364)
DNA (756bp) protein (252aa)
Acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJK5_AFIFE
Acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein {ECO:0000313|EMBL:EKS28644.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizob
CoA-binding protein
scnpilot_expt_750_bf_scaffold_1654_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13346..13861)
DNA (516bp) protein (172aa)
CoA-binding n=2 Tax=Oligotropha carboxidovorans RepID=B6JE32_OLICO
CoA-binding domain-containing protein
Acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein {ECO:0000313|EMBL:EKS28644.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizob
scnpilot_expt_750_bf_scaffold_1654_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13873..14583)
DNA (711bp) protein (237aa)
Acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJK5_AFIFE
CoA-binding domain-containing protein
Acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein {ECO:0000313|EMBL:EKS28644.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizob
scnpilot_expt_750_bf_scaffold_1654_18
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14942..16249)
DNA (1308bp) protein (436aa)
Oxalate/formate antiporter n=2 Tax=Oligotropha carboxidovorans RepID=B6JE31_OLICO rbh
oxalate/formate antiporter
Oxalate:formate antiporter {ECO:0000313|EMBL:AEI06225.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carbox
scnpilot_expt_750_bf_scaffold_1654_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17033..18763
DNA (1731bp) protein (577aa)
oxc; oxalyl-CoA decarboxylase (EC:4.1.1.8)
Oxalyl-CoA decarboxylase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NHU8_AFIFE rbh
Oxalyl-CoA decarboxylase {ECO:0000313|EMBL:EKS28641.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;
scnpilot_expt_750_bf_scaffold_1654_20
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18853..20127
DNA (1275bp) protein (425aa)
frc; formyl-coenzyme A transferase Frc (EC:2.8.3.16)
Formyl-CoA:oxalate CoA-transferase; Short=FCOCT;; EC=2.8.3.16 {ECO:0000255|HAMAP-Rule:MF_00742};; Formyl-coenzyme A transferase {ECO:0000255|HAMAP-Rule:MF_00742}; Short=Formyl-CoA transferase {ECO:000
Formyl-coenzyme A transferase n=2 Tax=Oligotropha carboxidovorans RepID=FCTA_OLICO rbh
scnpilot_expt_750_bf_scaffold_1654_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20514..21734
DNA (1221bp) protein (407aa)
Extracellular ligand-binding receptor n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5L5_9BRAD rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EFI51612.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" s
extracellular ligand-binding receptor
scnpilot_expt_750_bf_scaffold_1654_22
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21872..22552
DNA (681bp) protein (227aa)
Inner-membrane translocator n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5L6_9BRAD
Inner-membrane translocator {ECO:0000313|EMBL:EFI51613.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
inner-membrane translocator
scnpilot_expt_750_bf_scaffold_1654_23
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22518..22664
DNA (147bp) protein (49aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002FA8A3C
Inner-membrane translocator {ECO:0000313|EMBL:EFI51613.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
inner-membrane translocator
scnpilot_expt_750_bf_scaffold_1654_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22661..23608
DNA (948bp) protein (316aa)
Inner-membrane translocator n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5L7_9BRAD rbh
Leucine/isoleucine/valine transporter permease subunit {ECO:0000313|EMBL:CEG08415.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" sourc
inner-membrane translocator
scnpilot_expt_750_bf_scaffold_1654_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23605..23850
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NHU4_AFIFE
ABC transporter
Uncharacterized protein {ECO:0000313|EMBL:EKS28636.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
Displaying 25 items

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