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scnpilot_expt_750_bf_scaffold_3411

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_3411_1
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..631)
DNA (630bp) protein (210aa)
UPI0003D65326 related cluster n=1 Tax=unknown RepID=UPI0003D65326
Integrase {ECO:0000313|EMBL:ETI60497.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
integrase family protein
scnpilot_expt_750_bf_scaffold_3411_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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959..1519
DNA (561bp) protein (187aa)
Alkyl hydroperoxide reductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFR1_9SPHN rbh
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:ENY82558.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingop
alkyl hydroperoxide reductase
scnpilot_expt_750_bf_scaffold_3411_trna_1
unknown

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1661..1731
DNA (71bp)
transferRNA
scnpilot_expt_750_bf_scaffold_3411_3
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1900..3108
DNA (1209bp) protein (403aa)
integrase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI00024893DD rbh
Integrase {ECO:0000313|EMBL:KGB59218.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
phage integrase family protein
scnpilot_expt_750_bf_scaffold_3411_4
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3118..3975
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HJZ8_9SPHN
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AJA11268.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis f
scnpilot_expt_750_bf_scaffold_3411_5
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4148..4321
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IXS1_9SPHN
hypothetical protein
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:KGB59216.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphin
scnpilot_expt_750_bf_scaffold_3411_6
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4383..4910
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Gluconacetobacter europaeus RepID=UPI0002F5C809
Uncharacterized protein {ECO:0000313|EMBL:KGB59215.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
scnpilot_expt_750_bf_scaffold_3411_7
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4903..5391
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ74_SPHAL
Uncharacterized protein {ECO:0000313|EMBL:KGB59214.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
scnpilot_expt_750_bf_scaffold_3411_8
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5388..7232
DNA (1845bp) protein (615aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CP67_SPHYA rbh
Type IV secretory pathway VirD4 components-like protein {ECO:0000313|EMBL:KGB59213.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphing
Type IV secretory pathway VirD4 components-like protein
scnpilot_expt_750_bf_scaffold_3411_9
unknown

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comp(7502..9097)
DNA (1596bp) protein (532aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_3411_10
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9138..9947
DNA (810bp) protein (270aa)
TrwC protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ76_SPHAL
TrwC protein
TrwC protein {ECO:0000313|EMBL:ABF54196.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (s
scnpilot_expt_750_bf_scaffold_3411_11
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9989..10909
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J3U9_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KGB59211.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
scnpilot_expt_750_bf_scaffold_3411_12
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11117..11608
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HWZ1_9SPHN
Nucleotidyltransferase {ECO:0000313|EMBL:KGB59210.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp
hypothetical protein
scnpilot_expt_750_bf_scaffold_3411_13
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11605..11994
DNA (390bp) protein (130aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CP58_SPHYA
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKU74089.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" sour
hypothetical protein
scnpilot_expt_750_bf_scaffold_3411_14
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(12164..12397)
DNA (234bp) protein (78aa)
SpoVT/AbrB domain protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C066_NITHN
SpoVT/AbrB domain-containing protein Tax=RBG_16_Acidobacteria_68_9_curated
SpoVT/AbrB domain-containing protein
scnpilot_expt_750_bf_scaffold_3411_15
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12621..12752)
DNA (132bp) protein (44aa)
TonB-dependent receptor n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GXR1_CAUCN
Uncharacterized protein {ECO:0000313|EMBL:AHE54286.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
TonB-dependent receptor
Displaying 16 items

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