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scnpilot_expt_750_bf_scaffold_267

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Displaying items 1-30 of 96 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_267_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(157..1404)
DNA (1248bp) protein (416aa)
Major facilitator superfamily MFS_1 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W555_ACISJ
major facilitator superfamily transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABM41380.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;"
scnpilot_expt_750_bf_scaffold_267_2
Halomonas boliviensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1638..2561
DNA (924bp) protein (308aa)
Transcriptional activator rhrA n=1 Tax=Halomonas boliviensis LC1 RepID=G9E9G1_9GAMM
Transcriptional activator rhrA {ECO:0000313|EMBL:EHJ93713.1}; TaxID=1072583 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas bo
AraC type helix-turn-helix-domain containing protein
scnpilot_expt_750_bf_scaffold_267_3
unknown

Not on your lists

2681..3973
DNA (1293bp) protein (431aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_267_4
Deinococcus maricopensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

3974..5737
DNA (1764bp) protein (588aa)
TAP domain protein n=1 Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) RepID=E8UA72_DEIML
TAP domain-containing protein
TAP domain protein {ECO:0000313|EMBL:ADV67961.1}; TaxID=709986 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus maricopensis (strai
scnpilot_expt_750_bf_scaffold_267_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5875..6708)
DNA (834bp) protein (278aa)
LytTr DNA-binding region protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXM3_ALIDB rbh
lyttr DNA-binding region protein
Lyttr DNA-binding region protein {ECO:0000313|EMBL:GAO24369.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycli
scnpilot_expt_750_bf_scaffold_267_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6705..7778)
DNA (1074bp) protein (358aa)
Signal transduction histidine kinase, LytS n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDW6_ALIDK
signal transduction histidine kinase LytS
Signal transduction histidine kinase, LytS {ECO:0000313|EMBL:AEB83783.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source=
scnpilot_expt_750_bf_scaffold_267_7
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7867..8526)
DNA (660bp) protein (220aa)
glutathione S-transferase-like protein (EC:2.5.1.18)
Glutathione S-transferase {ECO:0000313|EMBL:KEA61376.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia comple
Glutathione S-transferase domain protein id=2559987 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
scnpilot_expt_750_bf_scaffold_267_8
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8531..8824)
DNA (294bp) protein (98aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXM1_ALIDB
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_expt_750_bf_scaffold_267_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8838..9398)
DNA (561bp) protein (187aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXM0_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB83785.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
scnpilot_expt_750_bf_scaffold_267_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9580..10404
DNA (825bp) protein (275aa)
undecaprenyl pyrophosphate phosphatase (EC:3.6.1.27) id=12552738 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
undecaprenyl pyrophosphate phosphatase (EC:3.6.1.27) Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
UDP pyrophosphate phosphatase (EC:3.6.1.27)
scnpilot_expt_750_bf_scaffold_267_11
Thauera sp. MZ1T, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10429..10716)
DNA (288bp) protein (96aa)
Uncharacterized protein n=2 Tax=Thauera RepID=C4KAI0_THASP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR01406.1}; TaxID=85643 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. (strain MZ1T).;"
scnpilot_expt_750_bf_scaffold_267_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10774..11529)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036B323F
Cell division protein ZapD {ECO:0000256|HAMAP-Rule:MF_01092, ECO:0000256|SAAS:SAAS00004483}; Z ring-associated protein D {ECO:0000256|HAMAP-Rule:MF_01092}; TaxID=1268622 species="Bacteria; Proteobacte
hypothetical protein
scnpilot_expt_750_bf_scaffold_267_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11561..12175)
DNA (615bp) protein (205aa)
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1603291 species="Bacteria; P
Dephospho-CoA kinase n=2 Tax=Alicycliphilus denitrificans RepID=E8U0D2_ALIDB
scnpilot_expt_750_bf_scaffold_267_14
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12179..13066)
DNA (888bp) protein (296aa)
prepilin peptidase (EC:3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme {ECO:0000256|RuleBase:RU003794}; EC=2.1.1.- {ECO:0000256|RuleBase:RU003794};; EC=3.4.23.43 {ECO:0000256|RuleBase:RU003794};; TaxID=535289
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MDZ1_ACIET rbh
scnpilot_expt_750_bf_scaffold_267_15
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13070..14287)
DNA (1218bp) protein (406aa)
Type II secretion system protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0I5_9BURK
type II secretion system protein
Type II secretion system protein {ECO:0000313|EMBL:AFU44634.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp
scnpilot_expt_750_bf_scaffold_267_16
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14309..16039)
DNA (1731bp) protein (577aa)
type II secretory protein GspE n=1 Tax=Acidovorax radicis RepID=UPI0002377BE5
General secretion pathway protein GspE {ECO:0000313|EMBL:KJA09654.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovor
type IV-A pilus assembly ATPase PilB
scnpilot_expt_750_bf_scaffold_267_17
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16229..16399)
DNA (171bp) protein (57aa)
50S ribosomal protein L33 n=2 Tax=Acidovorax RepID=K0I1N5_9BURK
rpmG; 50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. K
scnpilot_expt_750_bf_scaffold_267_18
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16420..16653)
DNA (234bp) protein (78aa)
50S ribosomal protein L28 n=9 Tax=Comamonadaceae RepID=RL28_ACIET
50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testostero
scnpilot_expt_750_bf_scaffold_267_19
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16833..17783)
DNA (951bp) protein (317aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderial
Thioredoxin reductase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WB78_ACISJ
thioredoxin reductase
scnpilot_expt_750_bf_scaffold_267_20
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17899..20220
DNA (2322bp) protein (774aa)
cell division protein FtsK n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036201DE
Cell division protein ftsk {ECO:0000313|EMBL:GAO20406.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus
DNA translocase FtsK
scnpilot_expt_750_bf_scaffold_267_21
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20337..20888
DNA (552bp) protein (184aa)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000380F886
Outer-membrane lipoprotein carrier protein {ECO:0000256|HAMAP-Rule:MF_00240, ECO:0000256|SAAS:SAAS00028972}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comam
outer-membrane lipoprotein carrier protein
scnpilot_expt_750_bf_scaffold_267_22
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20889..21773)
DNA (885bp) protein (295aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=1603291
UTP-glucose-1-phosphate uridylyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TV20_ALIDB rbh
UTP-glucose-1-phosphate uridylyltransferase
scnpilot_expt_750_bf_scaffold_267_23
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21881..24778)
DNA (2898bp) protein (966aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|H
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G3W9_ALIDK
scnpilot_expt_750_bf_scaffold_267_24
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24907..25320)
DNA (414bp) protein (138aa)
hypothetical protein; K07112 id=5079134 bin=GWF1_Burkholderiales_GWF1_66_17 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein; K07112 Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_267_25
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25317..25799)
DNA (483bp) protein (161aa)
hypothetical protein; K07112 Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein; K07112 id=12550184 bin=BDI species=unknown genus=Rhodoferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
scnpilot_expt_750_bf_scaffold_267_26
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25846..26526)
DNA (681bp) protein (227aa)
hypothetical protein id=12550446 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_267_27
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26523..27146)
DNA (624bp) protein (208aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TV17_ALIDB
hypothetical protein
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:GAO22326.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alic
scnpilot_expt_750_bf_scaffold_267_28
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27175..27771)
DNA (597bp) protein (199aa)
Cytochrome c class I n=2 Tax=Alicycliphilus denitrificans RepID=E8TV16_ALIDB
cytochrome c class i Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
cytochrome c class I
scnpilot_expt_750_bf_scaffold_267_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27805..28392)
DNA (588bp) protein (196aa)
Cytochrome C oxidase mono-heme subunit/FixO n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV15_ALIDB
cytochrome c oxidase mono-heme subunit/fixo
Cytochrome C oxidase mono-heme subunit/FixO {ECO:0000313|EMBL:ADV00547.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source
scnpilot_expt_750_bf_scaffold_267_30
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28382..30049)
DNA (1668bp) protein (556aa)
Cytochrome c oxidase, subunit I n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AFQ6_NITEC rbh
cytochrome c oxidase subunit I
Cytochrome c oxidase, subunit I {ECO:0000313|EMBL:ABI59826.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosom
Displaying items 1-30 of 96 in total

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