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scnpilot_expt_750_bf_scaffold_399

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_399_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3..1814)
DNA (1812bp) protein (604aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonada
DNA gyrase, a subunit (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037A851A
scnpilot_expt_750_bf_scaffold_399_2
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2044..2694
DNA (651bp) protein (217aa)
OmpA/MotB domain protein n=2 Tax=Acidovorax RepID=A1W8P9_ACISJ rbh
ompa/motb domain-containing protein
OmpA/MotB domain protein {ECO:0000313|EMBL:ACM32861.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Ac
scnpilot_expt_750_bf_scaffold_399_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2759..4756
DNA (1998bp) protein (666aa)
excinuclease ABC subunit C n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035F4DCF
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_0
excinuclease ABC subunit C
scnpilot_expt_750_bf_scaffold_399_4
unknown

Not on your lists

comp(4771..4887)
DNA (117bp) protein (39aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_399_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4997..5650)
DNA (654bp) protein (218aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8A9_ALIDK
scnpilot_expt_750_bf_scaffold_399_6
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5647..6255)
DNA (609bp) protein (203aa)
ChaC family protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MJJ8_ACIET
chac family protein
ChaC family protein {ECO:0000313|EMBL:ACM33336.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain
scnpilot_expt_750_bf_scaffold_399_7
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6382..6858
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=2 Tax=Acidovorax RepID=A1W8H5_ACISJ
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=535289 species="Bacteria
scnpilot_expt_750_bf_scaffold_399_8
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6861..7301
DNA (441bp) protein (147aa)
Putative uncharacterized protein n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0J256_COMT2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY33959.1}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni
scnpilot_expt_750_bf_scaffold_399_9
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7282..8181
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Comamonas sp. B-9 RepID=UPI000395D4A0
Uncharacterized protein {ECO:0000313|EMBL:KGH31047.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Ps
hypothetical protein
scnpilot_expt_750_bf_scaffold_399_10
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8236..8988)
DNA (753bp) protein (251aa)
Uncharacterized protein n=2 Tax=Acidovorax RepID=A1W8H2_ACISJ rbh
Glycosyltransferase {ECO:0000313|EMBL:KGG92523.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudo
hypothetical protein
scnpilot_expt_750_bf_scaffold_399_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8988..9458)
DNA (471bp) protein (157aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TQZ8_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00234.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
scnpilot_expt_750_bf_scaffold_399_12
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9478..10131
DNA (654bp) protein (218aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000255|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000255|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01547};
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=RLME_ACIAC
ribosomal RNA methyltransferase RrmJ/FtsJ
scnpilot_expt_750_bf_scaffold_399_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10249..12165
DNA (1917bp) protein (639aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkhold
ATP-dependent metalloprotease ftsh (EC:3.6.4.3)
ATP-dependent metalloprotease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003780361 rbh
scnpilot_expt_750_bf_scaffold_399_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12222..13073
DNA (852bp) protein (284aa)
dihydropteroate synthase (EC:2.5.1.15)
dihydropteroate synthase id=12551548 bin=BDI species=Acidovorax sp. MR-S7 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
dihydropteroate synthase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_expt_750_bf_scaffold_399_15
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13075..14406
DNA (1332bp) protein (444aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10) Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
glmM; phosphoglucosamine mutase (EC:5.4.2.10) id=12551549 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
scnpilot_expt_750_bf_scaffold_399_16
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14454..16061
DNA (1608bp) protein (536aa)
phosphohydrolase with GAF sensor n=1 Tax=Acidovorax radicis RepID=UPI00023762E1
Metal dependent phosphohydrolase {ECO:0000313|EMBL:EER60515.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax de
metal dependent phosphohydrolase with GAF sensor
scnpilot_expt_750_bf_scaffold_399_17
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16145..17464
DNA (1320bp) protein (440aa)
Methyltransferase type 12 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WB91_ACISJ rbh
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:ABM43516.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (stra
scnpilot_expt_750_bf_scaffold_399_18
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17471..18028)
DNA (558bp) protein (186aa)
HNH endonuclease n=2 Tax=Acidovorax RepID=A1WB92_ACISJ
hnh endonuclease
HNH endonuclease {ECO:0000313|EMBL:ACM34167.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPS
scnpilot_expt_750_bf_scaffold_399_19
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18183..19220
DNA (1038bp) protein (346aa)
riboflavin biosynthesis protein RibF (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=643561 species="Bacteria; Proteobacter
Riboflavin biosynthesis protein RibF n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q9W1_ACIAP
scnpilot_expt_750_bf_scaffold_399_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19296..22151
DNA (2856bp) protein (952aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0
Isoleucine--tRNA ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQ04_ALIDB
isoleucyl-tRNA synthetase
scnpilot_expt_750_bf_scaffold_399_21
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22144..22665
DNA (522bp) protein (174aa)
lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] id=12553120 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
lipoprotein signal peptidase (EC:3.4.23.36)
scnpilot_expt_750_bf_scaffold_399_22
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22687..23478)
DNA (792bp) protein (264aa)
gcp; putative O-sialoglycoprotein endopeptidase Gcp (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-th
UGMP family protein n=1 Tax=Brachymonas chironomi RepID=UPI00037EEE1A
scnpilot_expt_750_bf_scaffold_399_23
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23646..25340
DNA (1695bp) protein (565aa)
Na/Pi-cotransporter II-related protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MED2_ACIET
na/pi-cotransporter ii-like protein
Na/Pi-cotransporter II-related protein {ECO:0000313|EMBL:ACM34171.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax
scnpilot_expt_750_bf_scaffold_399_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25597..28122
DNA (2526bp) protein (842aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadale
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRF8_9GAMM rbh
scnpilot_expt_750_bf_scaffold_399_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28139..29236
DNA (1098bp) protein (366aa)
Ribonucleotide-diphosphate reductase subunit beta {ECO:0000313|EMBL:EIM02049.1}; EC=1.17.4.1 {ECO:0000313|EMBL:EIM02049.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanth
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC:1.17.4.1)
Ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRF7_9GAMM
scnpilot_expt_750_bf_scaffold_399_26
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29176..30072)
DNA (897bp) protein (299aa)
UPI0003A97A66 related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003A97A66
NTP pyrophosphohydrolases including oxidative damage repair enzymes {ECO:0000313|EMBL:GAD22813.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
NUDIX hydrolase
scnpilot_expt_750_bf_scaffold_399_27
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30069..31052)
DNA (984bp) protein (328aa)
Alcohol dehydrogenase zinc-binding domain-containing protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1M0_9BURK
Quinone oxidoreductase {ECO:0000313|EMBL:KJA11731.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
alcohol dehydrogenase zinc-binding domain-containing protein
scnpilot_expt_750_bf_scaffold_399_28
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31154..32059
DNA (906bp) protein (302aa)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037C694B
Uncharacterized protein {ECO:0000313|EMBL:GAD22815.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
hypothetical protein
scnpilot_expt_750_bf_scaffold_399_29
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32064..33401
DNA (1338bp) protein (446aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0J0_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU44644.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.
scnpilot_expt_750_bf_scaffold_399_30
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33377..34024)
DNA (648bp) protein (216aa)
lytic transglycosylase catalytic subunit
lytic transglycosylase catalytic subunit id=12549993 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Soluble lytic murein transglycosylase {ECO:0000313|EMBL:GAD23230.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovo
Displaying items 1-30 of 58 in total

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