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scnpilot_expt_750_bf_scaffold_400

Search features with annotation key words

Displaying items 1-30 of 50 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_400_1
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37..294)
DNA (258bp) protein (86aa)
Type I restriction-modification system specificity determinant n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AER0_9ACTN
Type I restriction-modification system specificity determinant {ECO:0000313|EMBL:EAR26111.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
type I restriction-modification system specificity determinant
scnpilot_expt_750_bf_scaffold_400_2
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(291..1295)
DNA (1005bp) protein (335aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas stutzeri ATCC 14405 = CCUG 16156 RepID=H7EQC2_PSEST rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHY75946.1}; TaxID=32042 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomona
hypothetical protein
scnpilot_expt_750_bf_scaffold_400_3
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1292..2050)
DNA (759bp) protein (253aa)
Putative type I restriction enzymeP M protein {ECO:0000313|EMBL:KFB76681.1}; EC=2.1.1.72 {ECO:0000313|EMBL:KFB76681.1};; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus
type I restriction endonuclease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035CE9AF
type I restriction-modification system, M subunit
scnpilot_expt_750_bf_scaffold_400_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2032..2817)
DNA (786bp) protein (262aa)
type I restriction endonuclease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035CE9AF
Type I restriction-modification system methyltransferase subunit {ECO:0000313|EMBL:GAD22622.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ac
type I restriction-modification system DNA methylase
scnpilot_expt_750_bf_scaffold_400_5
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2878..3402)
DNA (525bp) protein (175aa)
CoA-binding protein n=1 Tax=Acidovorax radicis RepID=UPI0002377C4F
CoA-binding domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
CoA-binding domain-containing protein
scnpilot_expt_750_bf_scaffold_400_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3399..4673)
DNA (1275bp) protein (425aa)
Lytic murein transglycosylase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZY6_ALIDB
lytic murein transglycosylase
Lytic murein transglycosylase {ECO:0000313|EMBL:GAO23519.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphi
scnpilot_expt_750_bf_scaffold_400_7
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4757..6193
DNA (1437bp) protein (479aa)
exodeoxyribonuclease I (EC:3.1.11.1)
Exodeoxyribonuclease I n=2 Tax=Alicycliphilus denitrificans RepID=E8TZY7_ALIDB rbh
ExodeoxyribonucleaseIprotein {ECO:0000313|EMBL:GAO23518.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphil
scnpilot_expt_750_bf_scaffold_400_8
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6160..7092)
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Comamonas sp. B-9 RepID=UPI00039572AF
Uncharacterized protein {ECO:0000313|EMBL:EJL87096.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="P
hypothetical protein
scnpilot_expt_750_bf_scaffold_400_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7202..9790)
DNA (2589bp) protein (863aa)
pii uridylyl-transferase (EC:2.7.7.59)
PII uridylyl-transferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003781FAD
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII
scnpilot_expt_750_bf_scaffold_400_10
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9816..10631)
DNA (816bp) protein (272aa)
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974
Methionine aminopeptidase n=2 Tax=Acidovorax RepID=A1W880_ACISJ rbh
scnpilot_expt_750_bf_scaffold_400_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10773..14798
DNA (4026bp) protein (1342aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G503_ALIDK
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule
scnpilot_expt_750_bf_scaffold_400_12
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15450..15854
DNA (405bp) protein (135aa)
SAM-dependent methyltransferase n=1 Tax=Ideonella sp. B508-1 RepID=UPI000346000A
Uncharacterized protein {ECO:0000313|EMBL:KDB52507.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans D
scnpilot_expt_750_bf_scaffold_400_13
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16124..17323
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034CCA28 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34878.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Aci
scnpilot_expt_750_bf_scaffold_400_14
unknown

Not on your lists

comp(17559..18209)
DNA (651bp) protein (217aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_400_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18318..19307
DNA (990bp) protein (330aa)
ferrochelatase (EC:4.99.1.1)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522};; Heme synthase {ECO:0000256|HAMAP-Rule:MF
Ferrochelatase n=1 Tax=Rhodanobacter denitrificans RepID=M4NHP6_9GAMM rbh
scnpilot_expt_750_bf_scaffold_400_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19304..20755
DNA (1452bp) protein (484aa)
Protoporphyrinogen oxidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQ12_9GAMM rbh
protoporphyrinogen oxidase
Protoporphyrinogen oxidase {ECO:0000313|EMBL:AGG89613.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" so
scnpilot_expt_750_bf_scaffold_400_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20745..21227
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQ13_9GAMM
Protein of unknown function (DUF664)
Uncharacterized protein {ECO:0000313|EMBL:AGG89614.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter de
scnpilot_expt_750_bf_scaffold_400_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21261..21929
DNA (669bp) protein (223aa)
Chlorite dismutase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQ14_9GAMM rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89615.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter de
scnpilot_expt_750_bf_scaffold_400_19
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22094..22876)
DNA (783bp) protein (261aa)
Cyclic nucleotide-binding domain-containing protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNN0_PUSST
Nitric oxide-responding transcriptional regulator Dnr
Nitric oxide-responding transcriptional regulator Dnr {ECO:0000313|EMBL:CDM24022.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniell
scnpilot_expt_750_bf_scaffold_400_20
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23302..24375
DNA (1074bp) protein (358aa)
Secretion protein HlyD family protein n=3 Tax=Delftia acidovorans RepID=A9BRZ6_DELAS
secretion protein HlyD family protein
HlyD family secretion protein {ECO:0000313|EMBL:EPD37277.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans
scnpilot_expt_750_bf_scaffold_400_21
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24372..27176
DNA (2805bp) protein (935aa)
ABC transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003672A1C rbh
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:GAD24004.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;"
ABC transporter-like protein
scnpilot_expt_750_bf_scaffold_400_22
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27180..28307
DNA (1128bp) protein (376aa)
membrane protein n=1 Tax=Brachymonas chironomi RepID=UPI000374913A
ABC transporter G family member 20 {ECO:0000313|EMBL:CDH75036.1}; TaxID=1306165 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudo
ABC transporter
scnpilot_expt_750_bf_scaffold_400_23
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28662..30008
DNA (1347bp) protein (449aa)
Metal dependent phosphohydrolase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GB44_ALIDK
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:AEB83535.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicyclip
scnpilot_expt_750_bf_scaffold_400_24
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30005..32428
DNA (2424bp) protein (808aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F595D
Diguanylate cyclase {ECO:0000313|EMBL:GAD22248.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
scnpilot_expt_750_bf_scaffold_400_25
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32671..33006)
DNA (336bp) protein (112aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein id=12552344 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
scnpilot_expt_750_bf_scaffold_400_26
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33003..33221)
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003604264
Uncharacterized protein {ECO:0000313|EMBL:GAD22246.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
hypothetical protein
scnpilot_expt_750_bf_scaffold_400_27
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33579..35426
DNA (1848bp) protein (616aa)
TonB-dependent receptor n=1 Tax=Acidovorax sp. KKS102 RepID=K0I6C2_9BURK
TonB-dependent receptor Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
TonB-dependent receptor
scnpilot_expt_750_bf_scaffold_400_28
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35431..36024
DNA (594bp) protein (198aa)
adenosylcobinamide kinase (EC:2.7.1.156)
adenosylcobinamide-phosphate guanylyltransferase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00037585A2
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase {ECO:0000313|EMBL:GAD22243.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamo
scnpilot_expt_750_bf_scaffold_400_29
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36021..36908
DNA (888bp) protein (296aa)
cobalamin ABC transporter periplasmic protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
periplasmic-binding protein; K02016 iron complex transport system substrate-binding protein id=5081272 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
periplasmic binding protein
scnpilot_expt_750_bf_scaffold_400_30
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36949..38022
DNA (1074bp) protein (358aa)
Transport system permease n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG89_9BURK
Transport system permease {ECO:0000313|EMBL:EIK88229.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga s
transport system permease
Displaying items 1-30 of 50 in total

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