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scnpilot_expt_750_bf_scaffold_844

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_844_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

114..1070
DNA (957bp) protein (319aa)
DMT(Drug/metabolite transporter) superfamily permease n=1 Tax=Variovorax sp. CF313 RepID=J2K3N2_9BURK
DMT(Drug/metabolite transporter) superfamily permease {ECO:0000313|EMBL:EJL67868.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonada
hypothetical protein
scnpilot_expt_750_bf_scaffold_844_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1169..1963)
DNA (795bp) protein (265aa)
Phosphonate-transporting ATPase {ECO:0000313|EMBL:AEB84884.1}; EC=3.6.3.28 {ECO:0000313|EMBL:AEB84884.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1S8_ALIDB
ABC transporter
scnpilot_expt_750_bf_scaffold_844_3
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1981..2889)
DNA (909bp) protein (303aa)
Inner-membrane translocator n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MJ68_ACIET
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ACM33206.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus
scnpilot_expt_750_bf_scaffold_844_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2970..3935)
DNA (966bp) protein (322aa)
ABC transporter substrate-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037BEDE1 rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAD24928.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Aci
hypothetical protein
scnpilot_expt_750_bf_scaffold_844_5
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4087..5781)
DNA (1695bp) protein (565aa)
dehydrogenase n=1 Tax=Acidovorax radicis RepID=UPI00023758E2
electron-transferring-flavoprotein dehydrogenase Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
electron-transferring-flavoprotein dehydrogenase
scnpilot_expt_750_bf_scaffold_844_trna_2
unknown

Not on your lists

comp(5921..6000)
DNA (80bp)
transferRNA
scnpilot_expt_750_bf_scaffold_844_trna_1
unknown

Not on your lists

comp(6048..6120)
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_844_6

Not on your lists

comp(6164..6586)
DNA (423bp) protein (141aa)
membrane protein n=1 Tax=Acidovorax avenae RepID=UPI0002DCB338
Uncharacterized protein {ECO:0000313|EMBL:EKD98014.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
scnpilot_expt_750_bf_scaffold_844_7
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6625..7161
DNA (537bp) protein (179aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Peptide deformylase; Short=PDF {ECO
peptide deformylase n=1 Tax=Acidovorax radicis RepID=UPI000237517E
peptide deformylase
scnpilot_expt_750_bf_scaffold_844_8
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7116..7484)
DNA (369bp) protein (123aa)
Thioredoxin domain protein n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0J5B0_COMT2
Thioredoxin domain protein
Thioredoxin domain protein {ECO:0000313|EMBL:ACY32383.1}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testostero
scnpilot_expt_750_bf_scaffold_844_9
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7508..8656)
DNA (1149bp) protein (383aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_012
Cyclic pyranopterin monophosphate synthase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T5L9_ACIDE
moaA; molybdenum cofactor biosynthesis protein A
scnpilot_expt_750_bf_scaffold_844_10
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8873..9763
DNA (891bp) protein (297aa)
hypothetical protein id=12557254 bin=CNBR_ACIDO species=Limnohabitans sp. Rim47 genus=Limnohabitans taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_844_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9750..12200)
DNA (2451bp) protein (817aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HA
lon; DNA-binding ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J7P9_HYPSM rbh
scnpilot_expt_750_bf_scaffold_844_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12197..12595)
DNA (399bp) protein (133aa)
Small heat shock protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMU1_9SPHN
Precorrin-6X reductase {ECO:0000313|EMBL:KFC68471.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
small heat shock protein
scnpilot_expt_750_bf_scaffold_844_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12661..13161)
DNA (501bp) protein (167aa)
Activator of Hsp90 ATPase 1 family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TTY6_ALIDB
activator of hsp90 atpase 1 family protein
ATPase 1 family protein {ECO:0000313|EMBL:GAO25987.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp
scnpilot_expt_750_bf_scaffold_844_14
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13428..14789
DNA (1362bp) protein (454aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q7E9_ACIAP
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADX47022.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Ac
scnpilot_expt_750_bf_scaffold_844_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14977..18096
DNA (3120bp) protein (1040aa)
acriflavin resistance protein n=1 Tax=Variovorax paradoxus RepID=UPI0003694BA5
mdtB; multidrug resistance protein MdtB
Multidrug resistance protein MdtB {ECO:0000313|EMBL:AGU50812.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
scnpilot_expt_750_bf_scaffold_844_16
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18191..18526
DNA (336bp) protein (112aa)
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_expt_750_bf_scaffold_844_17
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18786..21989
DNA (3204bp) protein (1068aa)
nodulation protein n=1 Tax=Acidovorax radicis RepID=UPI0002377B91
acriflavin resistance protein
Acriflavin resistance protein {ECO:0000313|EMBL:ABM32623.1}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" sourc
scnpilot_expt_750_bf_scaffold_844_18
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21986..23410
DNA (1425bp) protein (475aa)
NodT family RND efflux system outer membrane lipoprotein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BRV4_9BURK
NodT family RND efflux system outer membrane lipoprotein {ECO:0000313|EMBL:EHL24970.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.
outer membrane efflux protein, NodT family
scnpilot_expt_750_bf_scaffold_844_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23562..24101
DNA (540bp) protein (180aa)
Cytochrome c oxidase subunit II n=1 Tax=Rhodanobacter denitrificans RepID=I4WWW6_9GAMM
heme/copper-type cytochrome/quinol oxidase, subunit 2
Heme/copper-type cytochrome/quinol oxidase, subunit 2 {ECO:0000313|EMBL:AGG89571.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomona
scnpilot_expt_750_bf_scaffold_844_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24104..25603
DNA (1500bp) protein (500aa)
Heme/copper-type cytochrome/quinol oxidase, subunit 1 n=1 Tax=Rhodanobacter denitrificans RepID=M4NHL2_9GAMM
heme/copper-type cytochrome/quinol oxidase, subunit 1
Heme/copper-type cytochrome/quinol oxidase, subunit 1 {ECO:0000313|EMBL:AGG89572.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomona
scnpilot_expt_750_bf_scaffold_844_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25575..26189
DNA (615bp) protein (205aa)
Electron transport protein SCO1/SenC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA4_9GAMM
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:EIL97445.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rh
uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems
scnpilot_expt_750_bf_scaffold_844_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26189..26773
DNA (585bp) protein (195aa)
Putative transmembrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA5_9GAMM
Putative transmembrane protein {ECO:0000313|EMBL:EIL97446.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanob
hypothetical protein
scnpilot_expt_750_bf_scaffold_844_23
Pseudomonas taeanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26784..27794)
DNA (1011bp) protein (337aa)
Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WCG7_BURSC
AraC family transcriptional regulator {ECO:0000313|EMBL:KFX69460.1}; TaxID=1395571 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pse
helix-turn-helix domain protein
Displaying 25 items

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