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scnpilot_expt_750_bf_scaffold_25

Search features with annotation key words

Displaying items 1-30 of 279 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_25_1
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..4845)
DNA (4845bp) protein (1615aa)
YD repeat protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBY0_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO44102.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
YD repeat protein
scnpilot_expt_750_bf_scaffold_25_2
unknown

Not on your lists

comp(4936..5766)
DNA (831bp) protein (277aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_25_3
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5788..12783)
DNA (6996bp) protein (2332aa)
PA14 domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAM8_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO44101.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
PA14 domain-containing protein
scnpilot_expt_750_bf_scaffold_25_4
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12791..13888)
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PM13_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:GAO44100.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
hypothetical protein
scnpilot_expt_750_bf_scaffold_25_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13917..16157)
DNA (2241bp) protein (747aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PM12_CHIPD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACU62226.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinen
scnpilot_expt_750_bf_scaffold_25_6
unknown

Not on your lists

16232..16834
DNA (603bp) protein (201aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_25_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16769..17314)
DNA (546bp) protein (182aa)
Transposase n=1 Tax=Niabella soli DSM 19437 RepID=H1NND0_9SPHI
transposase
Transposase {ECO:0000313|EMBL:AHF15307.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_expt_750_bf_scaffold_25_8
unknown

Not on your lists

comp(17592..19031)
DNA (1440bp) protein (480aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_25_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(19028..19567)
DNA (540bp) protein (180aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L1R5_HALH1
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
ECF subfamily RNA polymerase sigma-24 subunit
scnpilot_expt_750_bf_scaffold_25_10
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19619..21367)
DNA (1749bp) protein (583aa)
Uncharacterized protein n=1 Tax=Kordia algicida OT-1 RepID=A9E3G2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:GAO45502.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
hypothetical protein
scnpilot_expt_750_bf_scaffold_25_11
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

21584..22303
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B333A3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL26225.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobac
scnpilot_expt_750_bf_scaffold_25_12
unknown

Not on your lists

22667..23374
DNA (708bp) protein (236aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_25_13
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23376..24263)
DNA (888bp) protein (296aa)
ROK family protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PHH9_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKD02309.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
scnpilot_expt_750_bf_scaffold_25_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24306..26591)
DNA (2286bp) protein (762aa)
Alpha-1,2-mannosidase n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QG27_SPILD
Alpha-mannosidase {ECO:0000313|EMBL:KIC93787.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter soli
alpha-mannosidase
scnpilot_expt_750_bf_scaffold_25_15
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26594..28600)
DNA (2007bp) protein (669aa)
xanthan lyase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003773440
xanthan lyase
Xanthan lyase {ECO:0000313|EMBL:ACT95911.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (s
scnpilot_expt_750_bf_scaffold_25_16
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(28610..29833)
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI0003747F20 rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CCH54141.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
major facilitator transporter
scnpilot_expt_750_bf_scaffold_25_17
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29852..30589)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E9D5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EDM37766.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BA
hypothetical protein
scnpilot_expt_750_bf_scaffold_25_18
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(30748..33117)
DNA (2370bp) protein (790aa)
Putative alpha-1,2-mannosidase n=1 Tax=Bacteroides uniformis ATCC 8492 RepID=A7V8Z3_BACUN rbh
Alpha-1,2-mannosidase {ECO:0000313|EMBL:AHM63173.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgace
alpha-1,2-mannosidase
scnpilot_expt_750_bf_scaffold_25_19
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33124..35013)
DNA (1890bp) protein (630aa)
Uncharacterized protein n=2 Tax=Parabacteroides johnsonii RepID=K5Z6R0_9PORP rbh
Uncharacterized protein {ECO:0000313|EMBL:EKN11239.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnson
hypothetical protein
scnpilot_expt_750_bf_scaffold_25_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(35075..36079)
DNA (1005bp) protein (335aa)
Transcriptional regulator, LacI family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLM3_NIAKG rbh
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:AEV96592.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niaste
scnpilot_expt_750_bf_scaffold_25_21
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36087..37775)
DNA (1689bp) protein (563aa)
Uncharacterized protein n=1 Tax=Bacteroides ovatus CL03T12C18 RepID=I9TJI8_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EIY69511.1}; TaxID=997886 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL03T12C18.;
hypothetical protein
scnpilot_expt_750_bf_scaffold_25_22
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(37772..39397)
DNA (1626bp) protein (542aa)
Putative secreted protein, putative xanthan lyase related n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01Q67_SOLUE rbh
hypothetical protein
Putative secreted protein, putative xanthan lyase related {ECO:0000313|EMBL:ABJ88203.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae
scnpilot_expt_750_bf_scaffold_25_23
Coprobacter sp. 177, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39425..41125)
DNA (1701bp) protein (567aa)
Uncharacterized protein n=1 Tax=Tannerella sp. CAG:118 RepID=R5I6F1_9PORP rbh
Uncharacterized protein {ECO:0000313|EMBL:KHM45445.1}; TaxID=1572646 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter sp. 177.;"
RagB/SusD family protein
scnpilot_expt_750_bf_scaffold_25_24
Tannerella sp. CAG:118, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(41148..44363)
DNA (3216bp) protein (1072aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Tannerella sp. CAG:118 RepID=R5IB30_9PORP rbh
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:CCY37519.1}; TaxID=1262978 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environme
Outer membrane receptor proteins, mostly Fe transport
scnpilot_expt_750_bf_scaffold_25_25
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(44628..45476)
DNA (849bp) protein (283aa)
Beta-lactamase domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6Y3_NIAKG
Putative hydrolase {ECO:0000313|EMBL:GAO41070.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter pet
beta-lactamase
scnpilot_expt_750_bf_scaffold_25_26
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(45489..46433)
DNA (945bp) protein (315aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W4G5_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT94066.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fer
scnpilot_expt_750_bf_scaffold_25_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(46632..47207)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037954CD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF17493.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 1943
scnpilot_expt_750_bf_scaffold_25_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(47319..48722)
DNA (1404bp) protein (468aa)
metallo-beta-lactamase n=1 Tax=Niabella aurantiaca RepID=UPI00035CA844 rbh
metallo-beta-lactamase
Metallo-beta-lactamase {ECO:0000313|EMBL:AHF14470.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437
scnpilot_expt_750_bf_scaffold_25_29
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(48732..49238)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDQ7_NIAKG
Thioesterase {ECO:0000313|EMBL:KIC90695.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilva
hypothetical protein
scnpilot_expt_750_bf_scaffold_25_30
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(49248..49736)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NMP7_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF14468.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 1943
Displaying items 1-30 of 279 in total

View Taxonomy
NameRatio
Sphingobacteriales
56.99%
unknown
20.07%
Cytophagales
7.89%
Flavobacteriales
6.81%
Bacteroidales
2.87%
Rhizobiales
0.72%
Ignavibacteriales
0.72%
Solibacterales
0.36%
Rickettsiales
0.36%
Myxococcales
0.36%
Methanosarcinales
0.36%
Lactobacillales
0.36%
Herpetosiphonales
0.36%
Enterobacteriales
0.36%
Clostridiales
0.36%
Chroococcales
0.36%
Burkholderiales
0.36%
Bacillales
0.36%
Sphingobacteriales: 0.5698924731182796unknown: 0.2007168458781362Cytophagales: 0.07885304659498207Flavobacteriales: 0.06810035842293907Bacteroidales: 0.02867383512544803Ignavibacteriales: 0.007168458781362007Rhizobiales: 0.007168458781362007Bacillales: 0.0035842293906810036Burkholderiales: 0.0035842293906810036Chroococcales: 0.0035842293906810036Clostridiales: 0.0035842293906810036Enterobacteriales: 0.0035842293906810036Herpetosiphonales: 0.0035842293906810036Lactobacillales: 0.0035842293906810036Methanosarcinales: 0.0035842293906810036Myxococcales: 0.0035842293906810036Rickettsiales: 0.0035842293906810036Solibacterales: 0.0035842293906810036Sphingobacterialesunknown