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scnpilot_expt_750_bf_scaffold_1291

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1291_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..709)
DNA (708bp) protein (236aa)
hypothetical protein, partial n=1 Tax=Thiobacillus thioparus RepID=UPI0003630216
chemotaxis sensory transducer Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
chemotaxis sensory transducer
scnpilot_expt_750_bf_scaffold_1291_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(916..1653)
DNA (738bp) protein (246aa)
ribosomal large subunit pseudouridine synthase A (EC:5.4.99.-); K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] Tax=GWE1_Thiobacillus_62_9_curated
ribosomal large subunit pseudouridine synthase A (EC:5.4.99.-)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003776B22 rbh
scnpilot_expt_750_bf_scaffold_1291_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1601..3055)
DNA (1455bp) protein (485aa)
leucyl aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1] Tax=GWE1_Thiobacillus_62_9_curated
leucyl aminopeptidase (EC:3.4.11.1)
peptidase M17 n=1 Tax=Thiobacillus thioparus RepID=UPI00036AEA2F rbh
scnpilot_expt_750_bf_scaffold_1291_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3168..4169
DNA (1002bp) protein (334aa)
dehydrogenase complex, E1 component subunit alpha; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] Tax=GWE1_Thiobacillus_62_9_curated
pyruvate dehydrogenase E1 subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI00035F0639 rbh
dehydrogenase complex, E1 component subunit alpha
scnpilot_expt_750_bf_scaffold_1291_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4190..5089
DNA (900bp) protein (300aa)
pyruvate dehydrogenase E1 subunit beta; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=GWE1_Thiobacillus_62_9_curated
Pyruvate dehydrogenase E1 beta subunit id=1326796 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
pyruvate dehydrogenase E1 subunit beta
scnpilot_expt_750_bf_scaffold_1291_6
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5147..5719)
DNA (573bp) protein (191aa)
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
scnpilot_expt_750_bf_scaffold_1291_7
unknown

Not on your lists

comp(5932..6279)
DNA (348bp) protein (116aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1291_8
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6289..6555)
DNA (267bp) protein (89aa)
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
scnpilot_expt_750_bf_scaffold_1291_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7035..7940
DNA (906bp) protein (302aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
pyruvate dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00035E3DE3
Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase E3 component {ECO:0000313|EMBL:AAZ96605.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenoph
scnpilot_expt_750_bf_scaffold_1291_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7937..8050
DNA (114bp) protein (38aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=GWE1_Thiobacillus_62_9_curated
pyruvate dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00035E3DE3
scnpilot_expt_750_bf_scaffold_1291_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8187..8777)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037F96A4 rbh
cytochrome c Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
cytochrome c
scnpilot_expt_750_bf_scaffold_1291_12
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8761..10227)
DNA (1467bp) protein (489aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003686CC9 rbh
sulfite oxidase SoxC
Uncharacterized protein {ECO:0000313|EMBL:CAL61208.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas ars
scnpilot_expt_750_bf_scaffold_1291_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10613..11770)
DNA (1158bp) protein (386aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377D092 rbh
serine-type D-Ala-D-Ala carboxypeptidase Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_750_bf_scaffold_1291_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11927..13240
DNA (1314bp) protein (438aa)
Na+/H+-glutamate/aspartate symport protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SL20_THIDA rbh
Na+/H+ - glutamate/aspartate symport protein; K03309 dicarboxylate/amino acid:cation (Na+ or H+) symporter, DAACS family Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Na+/H+ - glutamate/aspartate symport protein
scnpilot_expt_750_bf_scaffold_1291_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13245..14255
DNA (1011bp) protein (337aa)
dihydroorotate dehydrogenase 2 (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
dihydroorotate dehydrogenase 2 (EC:1.3.3.1)
dihydroorotate dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI000371B737 rbh
scnpilot_expt_750_bf_scaffold_1291_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14261..15508
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C5841 rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1291_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15577..16659
DNA (1083bp) protein (361aa)
L-alanine dehydrogenase (EC:1.4.1.1); K00259 alanine dehydrogenase [EC:1.4.1.1] Tax=GWE1_Thiobacillus_62_9_curated
L-alanine dehydrogenase (EC:1.4.1.1)
alanine dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00036495D6 rbh
scnpilot_expt_750_bf_scaffold_1291_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16661..17383)
DNA (723bp) protein (241aa)
phosphoglycerate mutase (EC:5.4.2.1); K01834 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
phosphoglycerate mutase (EC:5.4.2.1)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000365A9AE rbh
scnpilot_expt_750_bf_scaffold_1291_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17380..18033)
DNA (654bp) protein (218aa)
gpmB; phosphoglycerate mutase (EC:5.4.2.1); K15634 probable phosphoglycerate mutase [EC:5.4.2.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
gpmB; phosphoglycerate mutase (EC:5.4.2.1)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000371CEB4 rbh
scnpilot_expt_750_bf_scaffold_1291_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18253..19695
DNA (1443bp) protein (481aa)
cytochrome oxidase subunit I n=1 Tax=Thiobacillus thioparus RepID=UPI00035F2186 rbh
cytochrome c oxidase cbb3-type subunit I
Cytochrome c oxidase cbb3-type, subunit I {ECO:0000313|EMBL:AAZ96596.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" sour
scnpilot_expt_750_bf_scaffold_1291_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19709..20314
DNA (606bp) protein (202aa)
peptidase S41 n=1 Tax=Thiobacillus thioparus RepID=UPI00036EF681 rbh
cytochrome c oxidase, mono-heme subunit/FixO; K00405 cytochrome c oxidase cbb3-type subunit II Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
cytochrome C oxidase, mono-heme subunit/FixO
scnpilot_expt_750_bf_scaffold_1291_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20322..20492
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036AE018
cytochrome c oxidase subunit CcoQ; K00407 cytochrome c oxidase cbb3-type subunit IV Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
cytochrome c oxidase subunit CcoQ
scnpilot_expt_750_bf_scaffold_1291_23
unknown

Not on your lists

comp(20719..20892)
DNA (174bp) protein (58aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1291_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21588..22769
DNA (1182bp) protein (394aa)
cytochrome C oxidase n=1 Tax=Thiobacillus thioparus RepID=UPI00036A34A8
iron-sulfur 4Fe-4S ferredoxin transmembrane protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
iron-sulfur 4Fe-4S ferredoxin transmembrane protein
scnpilot_expt_750_bf_scaffold_1291_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22788..23315
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036EBCB3 rbh
hypothetical protein; K09926 hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1291_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23317..23451
DNA (135bp) protein (45aa)
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein id=1337107 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
scnpilot_expt_750_bf_scaffold_1291_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23477..23776
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036918FE
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1291_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23810..25303)
DNA (1494bp) protein (498aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000382EB53 rbh
diguanylate cyclase; K02488 two-component system, cell cycle response regulator Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
diguanylate cyclase
scnpilot_expt_750_bf_scaffold_1291_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25343..26641)
DNA (1299bp) protein (433aa)
coproporphyrinogen III oxidase (EC:1.3.99.22)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hy
Coproporphyrinogen-III oxidase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SL31_THIDA
scnpilot_expt_750_bf_scaffold_1291_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26788..27600
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035EC89D rbh
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
Displaying items 1-30 of 31 in total

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