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scnpilot_expt_750_bf_scaffold_1354

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1354_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..93
DNA (93bp) protein (31aa)
cbbI; ribose-5-phosphate isomerase A (EC:5.3.1.6); K01807 ribose 5-phosphate isomerase A [EC:5.3.1.6] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
ribose 5-phosphate isomerase n=1 Tax=Thiobacillus thioparus RepID=UPI00036AF4D3
scnpilot_expt_750_bf_scaffold_1354_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(97..294)
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035FC1CE
hypothetical protein; K09862 hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1354_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(291..1046)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003787C5C rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1354_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1099..1707)
DNA (609bp) protein (203aa)
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase id=1368674 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
scnpilot_expt_750_bf_scaffold_1354_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1707..2561)
DNA (855bp) protein (285aa)
type 4 prepilin peptidase 1 (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
type 4 prepilin peptidase 1 (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] id=12493284 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
type 4 prepilin peptidase 1 (EC:3.4.23.43)
scnpilot_expt_750_bf_scaffold_1354_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2558..3244)
DNA (687bp) protein (229aa)
type II secretion system protein F n=1 Tax=Thiobacillus thioparus RepID=UPI00037135CB
type IV pilus assembly protein PilC; K02653 type IV pilus assembly protein PilC Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
type IV pilus assembly protein PilC
scnpilot_expt_750_bf_scaffold_1354_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3741..4364)
DNA (624bp) protein (208aa)
type II secretory protein GspE n=1 Tax=Thiobacillus thioparus RepID=UPI00036CA70B
type IV pilus assembly protein, PilB
Type IV pilus assembly protein, PilB {ECO:0000313|EMBL:AAZ98323.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="T
scnpilot_expt_750_bf_scaffold_1354_8
unknown

Not on your lists

4739..5035
DNA (297bp) protein (99aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1354_9
unknown

Not on your lists

5132..5335
DNA (204bp) protein (68aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1354_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5462..6760)
DNA (1299bp) protein (433aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000374E723 rbh
transmembrane protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
transmembrane protein
scnpilot_expt_750_bf_scaffold_1354_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6772..7557)
DNA (786bp) protein (262aa)
transmembrane protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
transmembrane protein id=12493280 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
transmembrane protein
scnpilot_expt_750_bf_scaffold_1354_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7627..8970
DNA (1344bp) protein (448aa)
signal recognition particle protein Srp54 n=1 Tax=Thiobacillus thioparus RepID=UPI00036FA614 rbh
signal recognition particle subunit FFH/SRP54 (srp54)
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydroge
scnpilot_expt_750_bf_scaffold_1354_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9041..9292
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003790ADB
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rpsP; 30S ribosomal protein S16
scnpilot_expt_750_bf_scaffold_1354_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9321..9800
DNA (480bp) protein (160aa)
16S rRNA-processing protein RimM n=1 Tax=Thiobacillus thioparus RepID=UPI0003781D21 rbh
16S rRNA processing protein RimM; K02860 16S rRNA processing protein RimM Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
16S rRNA-processing protein RimM
scnpilot_expt_750_bf_scaffold_1354_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9800..10570
DNA (771bp) protein (257aa)
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] id=12493276 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31)
scnpilot_expt_750_bf_scaffold_1354_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10660..11043
DNA (384bp) protein (128aa)
50S ribosomal protein L19 n=1 Tax=Thiobacillus thioparus RepID=UPI0003804A71
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rplS; 50S ribosomal protein L19
scnpilot_expt_750_bf_scaffold_1354_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11194..11790
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036354E6 rbh
TetR family transcriptional regulator
Possible Transcriptional Regulator, TetR family {ECO:0000313|EMBL:AAZ97937.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;
scnpilot_expt_750_bf_scaffold_1354_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11801..12019
DNA (219bp) protein (73aa)
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein id=12493274 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
scnpilot_expt_750_bf_scaffold_1354_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12094..12564
DNA (471bp) protein (157aa)
methylated-DNA-(protein)-cysteine S-methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036CDE6B
methylated-DNA-(protein)-cysteine S-methyltransferase
scnpilot_expt_750_bf_scaffold_1354_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12545..13435
DNA (891bp) protein (297aa)
tyrosine recombinase XerD n=1 Tax=Thiobacillus thioparus RepID=UPI000380E9BF rbh
tyrosine recombinase XerD
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobaci
scnpilot_expt_750_bf_scaffold_1354_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13439..14395)
DNA (957bp) protein (319aa)
putative succinylglutamate desuccinylase; K01175 [EC:3.1.-.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
succinylglutamate desuccinylase n=1 Tax=Thiobacillus thioparus RepID=UPI000362733F rbh
succinylglutamate desuccinylase
scnpilot_expt_750_bf_scaffold_1354_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14392..14961)
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003730005
hypothetical protein; K07090 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1354_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15071..15445)
DNA (375bp) protein (125aa)
dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25] Tax=GWE1_Thiobacillus_62_9_curated
dienelactone hydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI00037233CF
dihydroneopterin aldolase
scnpilot_expt_750_bf_scaffold_1354_24
unknown

Not on your lists

comp(15532..15720)
DNA (189bp) protein (63aa)
nucleotide-binding protein n=1 Tax=Burkholderia pseudomallei RepID=UPI00016B1C8E
scnpilot_expt_750_bf_scaffold_1354_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15757..16032
DNA (276bp) protein (92aa)
acyl-phosphate glycerol-3-phosphate acyltransferase; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
glycerol-3-phosphate acyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00038288E8
acyl-phosphate glycerol-3-phosphate acyltransferase
scnpilot_expt_750_bf_scaffold_1354_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16049..16276
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003811AE9
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1354_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16285..16809
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003811AE9
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1354_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16813..17823)
DNA (1011bp) protein (337aa)
O-sialoglycoprotein endopeptidase (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
o-sialoglycoprotein endopeptidase (EC:3.4.24.57)
UGMP family protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035F8827 rbh
scnpilot_expt_750_bf_scaffold_1354_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17905..18117
DNA (213bp) protein (71aa)
30S ribosomal protein S21 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RS21_THIDA
rpsU; 30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000255|HAMAP-Rule:MF_00358}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobaci
scnpilot_expt_750_bf_scaffold_1354_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18146..18493
DNA (348bp) protein (116aa)
aspartyl-tRNA amidotransferase subunit B n=1 Tax=Thiobacillus thioparus RepID=UPI00036783EB
hypothetical protein; K09117 hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
Displaying 30 items

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