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scnpilot_expt_750_bf_scaffold_1637

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1637_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..458)
DNA (456bp) protein (152aa)
gidB; 16S rRNA methyltransferase GidB; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
16S rRNA methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037D15F7
gidB; 16S rRNA methyltransferase GidB
scnpilot_expt_750_bf_scaffold_1637_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(455..2353)
DNA (1899bp) protein (633aa)
tRNA uridine 5-carboxymethylaminomethyl modification protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381BD5C rbh
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000255|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000255|HAMAP-Rule:MF_00129}; TaxID=292415 species="Bacter
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
scnpilot_expt_750_bf_scaffold_1637_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2444..4393)
DNA (1950bp) protein (650aa)
ABC transporter ATP-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037EDE47 rbh
ABC transporter ATPase
ABC transporter ATPase {ECO:0000313|EMBL:AAZ98763.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus de
scnpilot_expt_750_bf_scaffold_1637_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4424..5134)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003664409 rbh
LamB/YcsF family protein; K07160 UPF0271 protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
LamB/YcsF family protein
scnpilot_expt_750_bf_scaffold_1637_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5131..6042)
DNA (912bp) protein (304aa)
allophanate hydrolase subunit 2 (EC:3.5.1.54)
Allophanate hydrolase subunit 2 {ECO:0000313|EMBL:AAZ98765.1}; EC=3.5.1.54 {ECO:0000313|EMBL:AAZ98765.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrog
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036BF6DD rbh
scnpilot_expt_750_bf_scaffold_1637_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6039..6689)
DNA (651bp) protein (217aa)
hypothetical protein id=12494067 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98766.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_expt_750_bf_scaffold_1637_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6941..7897
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036C812D rbh
PAS/PAC sensor-containing diguanylate cyclase Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
PAS/PAC sensor-containing diguanylate cyclase
scnpilot_expt_750_bf_scaffold_1637_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8003..8608)
DNA (606bp) protein (202aa)
RNA helicase n=1 Tax=Thiobacillus thioparus RepID=UPI000369E785
DEAD/DEAH box helicase Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
DEAD/DEAH box helicase
scnpilot_expt_750_bf_scaffold_1637_9
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8862..9386
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TG34_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDT37469.1}; TaxID=396597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex
scnpilot_expt_750_bf_scaffold_1637_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9885..10874)
DNA (990bp) protein (330aa)
ABC transporter ATP-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003693BC8
ABC transporter ATPase; K06148 ATP-binding cassette, subfamily C, bacterial Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
ABC transporter ATPase
scnpilot_expt_750_bf_scaffold_1637_11
unknown

Not on your lists

11160..11582
DNA (423bp) protein (141aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1637_12
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11660..12346)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361C58F rbh
Putative Cytochrome b/b6 domain {ECO:0000313|EMBL:CDI01509.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus
cytochrome B561
scnpilot_expt_750_bf_scaffold_1637_13
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12343..12762)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003809975
class II cytochrome c
Cytochrome c, class II {ECO:0000313|EMBL:ABD69188.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhod
scnpilot_expt_750_bf_scaffold_1637_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12903..14186)
DNA (1284bp) protein (428aa)
tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-] Tax=GWE1_Thiobacillus_62_9_curated
tRNA modification GTPase MnmE id=1307773 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
tRNA modification GTPase TrmE
scnpilot_expt_750_bf_scaffold_1637_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14158..15801)
DNA (1644bp) protein (548aa)
insertase n=1 Tax=Thiobacillus thioparus RepID=UPI0003760FD0 rbh
protein translocase subunit YidC; K03217 preprotein translocase subunit YidC Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
protein translocase subunit yidC
scnpilot_expt_750_bf_scaffold_1637_16
unknown

Not on your lists

15825..16223
DNA (399bp) protein (133aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1637_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16241..16375)
DNA (135bp) protein (45aa)
50S ribosomal protein L34
50S ribosomal protein L34P; K02914 large subunit ribosomal protein L34 id=12494274 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
50S ribosomal protein L34P; K02914 large subunit ribosomal protein L34 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_750_bf_scaffold_1637_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16995..17855
DNA (861bp) protein (287aa)
chromosomal replication initiator protein DnaA n=1 Tax=Thiobacillus denitrificans RepID=UPI00036210E3
chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein Tax=GWE1_Thiobacillus_62_9_curated
chromosome replication initiator DnaA
scnpilot_expt_750_bf_scaffold_1637_19
unknown

Not on your lists

comp(18041..18433)
DNA (393bp) protein (131aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1637_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18654..19058
DNA (405bp) protein (135aa)
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI000370F794
scnpilot_expt_750_bf_scaffold_1637_21
unknown

Not on your lists

19186..19356
DNA (171bp) protein (57aa)

This feature has no annotations

Displaying 21 items

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