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scnpilot_expt_750_bf_scaffold_1721

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1721_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..522)
DNA (522bp) protein (174aa)
ATP-dependent helicase HrpA; K03578 ATP-dependent helicase HrpA [EC:3.6.4.13] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
ATP-dependent helicase n=1 Tax=Thiobacillus thioparus RepID=UPI00036799EC
ATP-dependent helicase HrpA
scnpilot_expt_750_bf_scaffold_1721_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(465..1364)
DNA (900bp) protein (300aa)
ATP-dependent helicase HrpA; K03578 ATP-dependent helicase HrpA [EC:3.6.4.13] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
ATP-dependent helicase n=1 Tax=Thiobacillus thioparus RepID=UPI00036799EC
ATP-dependent helicase HrpA
scnpilot_expt_750_bf_scaffold_1721_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1336..2019)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B745B rbh
integral membrane protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1721_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2072..2746
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037991F6 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97963.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_expt_750_bf_scaffold_1721_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2781..3473
DNA (693bp) protein (231aa)
phosphoserine phosphatase (EC:3.1.3.3) Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
phosphoserine phosphatase (EC:3.1.3.3)
phosphoserine phosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI00037FEDE3 rbh
scnpilot_expt_750_bf_scaffold_1721_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3485..4492
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003777979 rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1721_7
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4510..7623)
DNA (3114bp) protein (1038aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379F2C6
cusA; RND family outer membrane copper/silver/drug transport protein Tax=RBG_16_Betaproteobacteria_56_24_curated
cusA; RND family outer membrane copper/silver/drug transport protein
scnpilot_expt_750_bf_scaffold_1721_8
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7638..8798)
DNA (1161bp) protein (387aa)
heavy metal efflux system protein; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB Tax=RBG_16_Gallionellales_56_9_curated
heavy metal efflux system protein; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB id=12493238 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RND family efflux transporter MFP subunit
scnpilot_expt_750_bf_scaffold_1721_9
unknown

Not on your lists

comp(8829..8942)
DNA (114bp) protein (38aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1721_10
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8998..10023)
DNA (1026bp) protein (342aa)
Multicopper oxidase type 3 n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GQK7_THISH rbh
multicopper oxidase type 3
Thiolapillus brandeum DNA, complete genome {ECO:0000313|EMBL:BAO44612.1}; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
scnpilot_expt_750_bf_scaffold_1721_11
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10041..11063)
DNA (1023bp) protein (341aa)
Multicopper oxidase type 3 n=1 Tax=Thioalkalivibrio sp. (strain K90mix) RepID=D3SAQ3_THISK
multicopper oxidase type 3
Thiolapillus brandeum DNA, complete genome {ECO:0000313|EMBL:BAO44613.1}; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
scnpilot_expt_750_bf_scaffold_1721_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11514..11987)
DNA (474bp) protein (158aa)
Rrf2 family transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00037755F5
BadM/Rrf2 family transcriptional regulator; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
BadM/Rrf2 family transcriptional regulator
scnpilot_expt_750_bf_scaffold_1721_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12223..14433
DNA (2211bp) protein (737aa)
putative nitric oxide reductase (subunit B) transmembrane protein; K04561 nitric oxide reductase subunit B [EC:1.7.2.5] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
nitric oxide reductase n=1 Tax=Thiobacillus thioparus RepID=UPI00037F4807
cytochrome C and Quinol oxidase polypeptide I family protein
scnpilot_expt_750_bf_scaffold_1721_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14710..15144
DNA (435bp) protein (145aa)
electron transport complex RsxE subunit n=1 Tax=Thiobacillus thioparus RepID=UPI0003814AA2
RnfABCDGE type electron transport complex subunit A; K03617 electron transport complex protein RnfA Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RnfABCDGE type electron transport complex subunit A
scnpilot_expt_750_bf_scaffold_1721_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15144..17309
DNA (2166bp) protein (722aa)
electron transporter RnfC n=1 Tax=Thiobacillus thioparus RepID=UPI00037348F6 rbh
electron transport complex protein RnfC
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" sourc
scnpilot_expt_750_bf_scaffold_1721_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17309..18280
DNA (972bp) protein (324aa)
electron transporter RnfG n=1 Tax=Thiobacillus thioparus RepID=UPI000366C1D3
RnfABCDGE type electron transport complex subunit D; K03614 electron transport complex protein RnfD Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RnfABCDGE type electron transport complex subunit D
scnpilot_expt_750_bf_scaffold_1721_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18277..18927
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361736F rbh
RnfABCDGE type electron transport complex subunit G; K03612 electron transport complex protein RnfG Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RnfABCDGE type electron transport complex subunit G
scnpilot_expt_750_bf_scaffold_1721_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18924..19601
DNA (678bp) protein (226aa)
electron transporter RsxE n=1 Tax=Thiobacillus thioparus RepID=UPI000372F93D rbh
electron transport complex RsxE subunit
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" sourc
scnpilot_expt_750_bf_scaffold_1721_19
Thiobacillus sp. SCN1, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19598..19750
DNA (153bp) protein (51aa)
hypothetical protein id=12495625 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein id=12495625 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
scnpilot_expt_750_bf_scaffold_1721_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19761..20405
DNA (645bp) protein (215aa)
DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (EC:3.2.2.- 4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] id=12495624 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (EC:3.2.2.- 4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (EC:3.2.2.- 4.2.99.18)
scnpilot_expt_750_bf_scaffold_1721_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20405..20686
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000365B5B0
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1721_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20959..22875
DNA (1917bp) protein (639aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003775F96 rbh
response regulator receiver modulated diguanylate cyclase Tax=GWE1_Thiobacillus_62_9_curated
response regulator receiver modulated diguanylate cyclase
scnpilot_expt_750_bf_scaffold_1721_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22930..25323)
DNA (2394bp) protein (798aa)
acetyl-CoA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI00036BFDE9 rbh
long-chain fatty-acid-CoA ligase; K09181 hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
long-chain fatty-acid-CoA ligase
Displaying 23 items

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