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scnpilot_expt_750_bf_scaffold_1824

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1824_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..258)
DNA (258bp) protein (86aa)
adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
adenylosuccinate synthetase (EC:6.3.4.4)
adenylosuccinate synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI00037B2587
scnpilot_expt_750_bf_scaffold_1824_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(527..1456)
DNA (930bp) protein (310aa)
ATP phosphoribosyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI000365B4D8
ATP phosphoribosyltransferase regulatory subunit; K02502 ATP phosphoribosyltransferase regulatory subunit Tax=GWE1_Thiobacillus_62_9_curated
ATP phosphoribosyltransferase
scnpilot_expt_750_bf_scaffold_1824_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1458..1646)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000374ED1F
hypothetical protein; K09937 hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1824_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1643..2524)
DNA (882bp) protein (294aa)
hypothetical protein; K04087 membrane protease subunit HflC [EC:3.4.-.-] Tax=GWE1_Thiobacillus_62_9_curated
membrane protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377F2E9 rbh
hypothetical protein
scnpilot_expt_750_bf_scaffold_1824_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2521..3717)
DNA (1197bp) protein (399aa)
HflK; K04088 membrane protease subunit HflK [EC:3.4.-.-] Tax=GWE1_Thiobacillus_62_9_curated
membrane protein n=1 Tax=Thiobacillus thioparus RepID=UPI000378EA0C rbh
HflK
scnpilot_expt_750_bf_scaffold_1824_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3727..4881)
DNA (1155bp) protein (385aa)
GTP-binding proten HflX n=1 Tax=Thiobacillus thioparus RepID=UPI0003813713 rbh
GTP-binding protein HflX; K03665 GTP-binding protein HflX Tax=GWE1_Thiobacillus_62_9_curated
GTP-binding protein HflX
scnpilot_expt_750_bf_scaffold_1824_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5075..6166)
DNA (1092bp) protein (364aa)
galactose-1-phosphate uridyl transferase, class I (EC:2.7.7.10); K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
galactose-1-phosphate uridyl transferase, class I (EC:2.7.7.10)
galactose-1-phosphate uridylyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003739CB2 rbh
scnpilot_expt_750_bf_scaffold_1824_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6337..6618
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037FE23C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96553.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_expt_750_bf_scaffold_1824_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6658..6909
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000382C731
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1824_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6983..8392)
DNA (1410bp) protein (470aa)
GTP-binding protein Der n=1 Tax=Thiobacillus thioparus RepID=UPI000374D2C3 rbh
engA; GTP-binding protein EngA
GTPase Der {ECO:0000255|HAMAP-Rule:MF_00195}; GTP-binding protein EngA {ECO:0000255|HAMAP-Rule:MF_00195}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydroge
scnpilot_expt_750_bf_scaffold_1824_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8412..9518)
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035D8E27
pyrrolo-quinoline quinone Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
pyrrolo-quinoline quinone
scnpilot_expt_750_bf_scaffold_1824_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9515..9661)
DNA (147bp) protein (49aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036ADEA0
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1824_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10058..10693)
DNA (636bp) protein (212aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
histidyl-tRNA synthase n=1 Tax=Thiobacillus thioparus RepID=UPI000379B79B
scnpilot_expt_750_bf_scaffold_1824_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10653..11264)
DNA (612bp) protein (204aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
histidyl-tRNA synthase n=1 Tax=Thiobacillus thioparus RepID=UPI000379B79B
Suspect SCG annotation. See neighboring gene [scnpilot_expt_750_bf_scaffold_1824_13].
scnpilot_expt_750_bf_scaffold_1824_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11288..12508)
DNA (1221bp) protein (407aa)
ispG, gcpE; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] Tax=GWE1_Thiobacillus_62_9_curated
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00038079C3 rbh
scnpilot_expt_750_bf_scaffold_1824_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12508..12741)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003612C3D
hypothetical protein; K15539 cytoskeleton protein RodZ Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1824_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13246..14022)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000374CD6D rbh
TPR repeat-containing pilus assembly protein PilF
Putative pilus assembly protein PilF, TPR repeat {ECO:0000313|EMBL:AAZ96545.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.
scnpilot_expt_750_bf_scaffold_1824_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14019..15137)
DNA (1119bp) protein (373aa)
hypothetical protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
50S rRNA methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037D5F95 rbh
hypothetical protein
scnpilot_expt_750_bf_scaffold_1824_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15147..15575)
DNA (429bp) protein (143aa)
nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=GWE1_Thiobacillus_62_9_curated
nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase id=1357660 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
scnpilot_expt_750_bf_scaffold_1824_20
unknown

Not on your lists

16099..16290
DNA (192bp) protein (64aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1824_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16970..17104)
DNA (135bp) protein (45aa)
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
acetyl-CoA carboxylase subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI0003611905
scnpilot_expt_750_bf_scaffold_1824_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17907..18779)
DNA (873bp) protein (291aa)
fkbp-type peptidyl-prolyl cis-trans isomerase; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
peptidylprolyl isomerase n=1 Tax=Thiobacillus thioparus RepID=UPI00037B3FE9 rbh
FKBP-type peptidylprolyl isomerase
scnpilot_expt_750_bf_scaffold_1824_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18855..19973
DNA (1119bp) protein (373aa)
cupin n=1 Tax=Thiobacillus thioparus RepID=UPI000366EC5F rbh
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1824_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19970..20440
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000366E1ED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96537.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
scnpilot_expt_750_bf_scaffold_1824_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20442..21215)
DNA (774bp) protein (258aa)
hypothetical protein id=12493881 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1824_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21233..23257)
DNA (2025bp) protein (675aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000364B141 rbh
hypothetical protein; K11720 lipopolysaccharide export system permease protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1824_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23420..24931
DNA (1512bp) protein (504aa)
leucyl aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
leucyl aminopeptidase (EC:3.4.11.1)
multifunctional aminopeptidase A n=1 Tax=Thiobacillus thioparus RepID=UPI000370ADF5 rbh
scnpilot_expt_750_bf_scaffold_1824_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24942..25370
DNA (429bp) protein (143aa)
DNA polymerase III subunit chi (EC:2.7.7.7); K02339 DNA polymerase III subunit chi [EC:2.7.7.7] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
DNA polymerase III subunit chi (EC:2.7.7.7)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B0C38
scnpilot_expt_750_bf_scaffold_1824_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25381..25857
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036508BC
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1824_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


26275..27732
DNA (1458bp) protein (486aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02004}; EC=6.1.1.9 {ECO:0000255|HAMAP-Rule:MF_02004};; Valyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02004}; Short=ValRS {ECO:0000255|HAMAP-Rule:MF_02
Valine--tRNA ligase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=SYV_THIDA
Displaying 30 items

View Taxonomy