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scnpilot_expt_750_bf_scaffold_476

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Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_476_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(133..1371)
DNA (1239bp) protein (413aa)
isocitrate dehydrogenase (NADP) (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
isocitrate dehydrogenase (NADP) (EC:1.1.1.42)
isocitrate dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00035FAE0E rbh
scnpilot_expt_750_bf_scaffold_476_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1429..1956
DNA (528bp) protein (176aa)
ribosomal large subunit pseudouridine synthase E (EC:5.4.99.-); K06181 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] Tax=GWE1_Thiobacillus_62_9_curated
ribosomal large subunit pseudouridine synthase E (EC:5.4.99.-)
ribosomal large subunit pseudouridine synthase E n=1 Tax=Thiobacillus thioparus RepID=UPI000367E822 rbh
scnpilot_expt_750_bf_scaffold_476_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1949..2416
DNA (468bp) protein (156aa)
NUDIX hydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI000366DA63
putative hydrolase Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hydrolase
scnpilot_expt_750_bf_scaffold_476_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2413..3489
DNA (1077bp) protein (359aa)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
thiouridylase n=1 Tax=Thiobacillus thioparus RepID=UPI00036C02CF rbh
scnpilot_expt_750_bf_scaffold_476_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3739..5433
DNA (1695bp) protein (565aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18); K01886 glutaminyl-tRNA synthetase [EC:6.1.1.18] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
glutaminyl-tRNA synthetase (EC:6.1.1.18)
glutaminyl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI00035CA82F rbh
scnpilot_expt_750_bf_scaffold_476_6
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5487..6692
DNA (1206bp) protein (402aa)
SMC domain protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RSS1_ACCPU rbh
SMC domain-containing protein
SMC domain protein {ECO:0000313|EMBL:ACV35973.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
scnpilot_expt_750_bf_scaffold_476_7
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7324..7740)
DNA (417bp) protein (139aa)
Glutathione-dependent formaldehyde-activating GFA n=1 Tax=Methylomonas methanica (strain MC09) RepID=F9ZXU9_METMM
glutathione-dependent formaldehyde-activating GFA
Glutathione-dependent formaldehyde-activating GFA {ECO:0000313|EMBL:AEF98528.1}; TaxID=857087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;"
scnpilot_expt_750_bf_scaffold_476_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7928..8461)
DNA (534bp) protein (178aa)
methionine sulfoxide reductase A (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] Tax=GWE1_Thiobacillus_62_9_curated
methionine sulfoxide reductase A (EC:1.8.4.11)
methionine sulfoxide reductase A n=1 Tax=Thiobacillus thioparus RepID=UPI00035C317D rbh
scnpilot_expt_750_bf_scaffold_476_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8474..9088)
DNA (615bp) protein (205aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18] Tax=GWE1_Thiobacillus_62_9_curated
glutathione S-transferase n=1 Tax=Thiobacillus thioparus RepID=UPI000373EC80 rbh
glutathione S-transferase
scnpilot_expt_750_bf_scaffold_476_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9116..9712)
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B4B4C rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_476_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9776..11200)
DNA (1425bp) protein (475aa)
threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
threonine synthase (EC:4.2.3.1)
threonine synthase n=1 Tax=Thiobacillus thioparus RepID=UPI000376EC42 rbh
scnpilot_expt_750_bf_scaffold_476_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11216..12529)
DNA (1314bp) protein (438aa)
homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
homoserine dehydrogenase (EC:1.1.1.3)
homoserine dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI0003646415 rbh
scnpilot_expt_750_bf_scaffold_476_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12554..13798)
DNA (1245bp) protein (415aa)
aminotransferase (EC:2.6.1.-)
aminotransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037DD482 rbh
Probable aspartate transaminase {ECO:0000313|EMBL:AAZ96795.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thioba
scnpilot_expt_750_bf_scaffold_476_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13965..14345
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003727D7B
hypothetical protein; K09008 hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_476_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15293..15946)
DNA (654bp) protein (218aa)
haloacid dehalogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00036EC10E rbh
HAD family hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
HAD family hydrolase
scnpilot_expt_750_bf_scaffold_476_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15969..16919)
DNA (951bp) protein (317aa)
RNA polymerase sigma factor RpoS n=1 Tax=Thiobacillus thioparus RepID=UPI0003782783 rbh
RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RNA polymerase sigma factor RpoS
scnpilot_expt_750_bf_scaffold_476_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16916..17848)
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037D2641 rbh
peptidoglycan-binding protein LysM
Peptidoglycan-binding protein LysM {ECO:0000313|EMBL:AAZ96790.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobaci
scnpilot_expt_750_bf_scaffold_476_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17848..18528)
DNA (681bp) protein (227aa)
protein-L-isoaspartate(D-aspartate) O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000255|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000255|HAMAP-Rule:M
protein-L-isoaspartate O-methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00036B3086 rbh
scnpilot_expt_750_bf_scaffold_476_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18513..19256)
DNA (744bp) protein (248aa)
surE; stationary phase survival protein SurE (EC:3.1.3.5 3.1.3.6 3.6.1.11); K03787 5'-nucleotidase [EC:3.1.3.5] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
surE; stationary phase survival protein SurE (EC:3.1.3.5 3.1.3.6 3.6.1.11)
stationary phase survival protein SurE n=1 Tax=Thiobacillus thioparus RepID=UPI000371C54F rbh
scnpilot_expt_750_bf_scaffold_476_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19360..23085)
DNA (3726bp) protein (1242aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000380F90C rbh
Putative signal peptide protein {ECO:0000313|EMBL:AAZ96787.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillu
signal peptide protein
scnpilot_expt_750_bf_scaffold_476_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23082..24818)
DNA (1737bp) protein (579aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036EE8B1 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96786.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" sou
scnpilot_expt_750_bf_scaffold_476_22
BJP_IG2158_Actinobacteria_57_21, Bacteria

Not on your lists

comp(24889..25335)
DNA (447bp) protein (149aa)
activator of HSP90 ATPase n=1 Tax=Thiobacillus thioparus RepID=UPI0003604153
polyketide cyclase
Tax=BJP_IG2158_Actinobacteria_57_21
scnpilot_expt_750_bf_scaffold_476_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25350..28007)
DNA (2658bp) protein (886aa)
protein disaggregation chaperone n=1 Tax=Thiobacillus thioparus RepID=UPI00037479E0
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus
ClpB protein
scnpilot_expt_750_bf_scaffold_476_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28099..28941
DNA (843bp) protein (281aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19); K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
nicotinate-nucleotide pyrophosphorylase n=1 Tax=Thiobacillus thioparus RepID=UPI0003682D17 rbh
scnpilot_expt_750_bf_scaffold_476_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28949..29431
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C3BFF
putative acetyltransferase Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
acetyltransferase
scnpilot_expt_750_bf_scaffold_476_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29419..30270
DNA (852bp) protein (284aa)
DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
DNA ligase (EC:6.5.1.1)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035D065C rbh
scnpilot_expt_750_bf_scaffold_476_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30273..30857)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037282AA rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_476_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30927..31646)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000365AF14 rbh
hypothetical protein; K05810 conserved hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_476_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31643..32620)
DNA (978bp) protein (326aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenoph
ribosomal large subunit pseudouridine synthase D n=1 Tax=Thiobacillus thioparus RepID=UPI000364D88F rbh
scnpilot_expt_750_bf_scaffold_476_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32673..33446
DNA (774bp) protein (258aa)
competence protein ComL n=1 Tax=Thiobacillus thioparus RepID=UPI0003823052 rbh
putative competence lipoprotein; K05807 putative lipoprotein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
competence lipoprotein
Displaying items 1-30 of 72 in total

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