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scnpilot_expt_750_bf_scaffold_637

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_637_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1807
DNA (1806bp) protein (602aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C7C47 rbh
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
TonB-dependent receptor
scnpilot_expt_750_bf_scaffold_637_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1777..2175
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C7C47
TonB-dependent receptor protein; K02014 iron complex outermembrane recepter protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
tonB dependent receptor family protein
scnpilot_expt_750_bf_scaffold_637_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2178..2843
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003731309
TonB protein; K03832 periplasmic protein TonB Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
TonB protein
scnpilot_expt_750_bf_scaffold_637_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2845..3573
DNA (729bp) protein (243aa)
flagellar motor protein MotA n=1 Tax=Thiobacillus thioparus RepID=UPI00037A2A8B rbh
MotA/TolQ/ExbB proton channel family protein; K03561 biopolymer transport protein ExbB Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
MotA/TolQ/ExbB proton channel family protein
scnpilot_expt_750_bf_scaffold_637_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3577..3996
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003681707
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
biopolymer transport protein ExbD/TolR
scnpilot_expt_750_bf_scaffold_637_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4309..4746
DNA (438bp) protein (146aa)
OmpW family protein; K07275 outer membrane protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OmpW family protein; K07275 outer membrane protein id=12492978 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
scnpilot_expt_750_bf_scaffold_637_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5240..5518
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037D0BDB
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_637_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5530..5829
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C695C
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_637_9
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5948..7111
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003681587 rbh
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:AKH22152.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
acyl-CoA dehydrogenase domain-containing protein
scnpilot_expt_750_bf_scaffold_637_10
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7116..9587
DNA (2472bp) protein (824aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyp
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003757910 rbh
multi-sensor signal transduction histidine kinase
scnpilot_expt_750_bf_scaffold_637_11
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9565..10200
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003751263 rbh
LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ADJ22544.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.
scnpilot_expt_750_bf_scaffold_637_12
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10488..11768
DNA (1281bp) protein (427aa)
fatty acid desaturase n=1 Tax=Thiobacillus thioparus RepID=UPI000360B993 rbh
fatty acid desaturase
Fatty acid desaturase {ECO:0000313|EMBL:ADJ22551.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denit
scnpilot_expt_750_bf_scaffold_637_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11845..12210
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C7E7C
globin; K06886 hemoglobin Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
globin
scnpilot_expt_750_bf_scaffold_637_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12977..13255
DNA (279bp) protein (93aa)
oxidoreductase FAD/NAD(P)-binding domain-containing protein; K00523 CDP-4-dehydro-6-deoxyglucose reductase [EC:1.17.1.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000373E7F1
oxidoreductase FAD/NAD(P)-binding domain-containing protein
scnpilot_expt_750_bf_scaffold_637_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13475..14752
DNA (1278bp) protein (426aa)
PAS/PAC sensor signal transduction histidine kinase id=12498628 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
PAS/PAC sensor signal transduction histidine kinase Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
PAS/PAC sensor signal transduction histidine kinase
scnpilot_expt_750_bf_scaffold_637_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14745..15380
DNA (636bp) protein (212aa)
response regulator receiver protein; K14987 two-component system, LuxR family, response regulator FixJ id=12498627 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
response regulator Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
two-component response regulator, LuxR family
scnpilot_expt_750_bf_scaffold_637_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15567..16109
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037EDC06 rbh
OsmC family protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OsmC family protein
scnpilot_expt_750_bf_scaffold_637_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16168..17583
DNA (1416bp) protein (472aa)
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000376FF75 rbh
dihydrolipoamide dehydrogenase
scnpilot_expt_750_bf_scaffold_637_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17564..17959
DNA (396bp) protein (132aa)
glycine cleavage system H protein; K02437 glycine cleavage system H protein id=12494998 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
glycine cleavage system protein H; K02437 glycine cleavage system H protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
glycine cleavage system H protein
scnpilot_expt_750_bf_scaffold_637_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17990..18385
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035E413F
rhodanese-like protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rhodanese-like protein
scnpilot_expt_750_bf_scaffold_637_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18489..19193)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C0F36 rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_637_22
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19276..20631)
DNA (1356bp) protein (452aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000376FFF7 rbh
sulfur oxidation protein, flavocytochrome c Tax=CG_Hydro_01
sulfur oxidation protein, flavocytochrome C
scnpilot_expt_750_bf_scaffold_637_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20796..20972)
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003744D2C
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_637_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21114..21653)
DNA (540bp) protein (180aa)
aldehyde-activating protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035FC768 rbh
putative formaldehyde-activating enzyme Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
putative formaldehyde-activating enzyme
scnpilot_expt_750_bf_scaffold_637_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21671..22993)
DNA (1323bp) protein (441aa)
NADH dehydrogenase (EC:1.6.99.3); K03885 NADH dehydrogenase [EC:1.6.99.3] id=12494356 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
NADH dehydrogenase (EC:1.6.99.3)
NADH dehydrogenase {ECO:0000313|EMBL:AAZ98173.1}; EC=1.6.99.3 {ECO:0000313|EMBL:AAZ98173.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae;
scnpilot_expt_750_bf_scaffold_637_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23044..24249)
DNA (1206bp) protein (402aa)
SCO1/SenC family protein/methylamine utilization protein MauG Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCO1/SenC family protein/methylamine utilization protein MauG id=12498378 bin=THIO_MID species=Methylomicrobium alcaliphilum genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
SCO1/SenC family protein/methylamine utilization protein MauG
scnpilot_expt_750_bf_scaffold_637_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24246..25007)
DNA (762bp) protein (254aa)
SCO1/SenC family protein/methylamine utilization protein MauG Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCO1/SenC family protein/methylamine utilization protein MauG id=12498377 bin=THIO_MID species=Methylobacter marinus genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
SCO1/SenC family protein/methylamine utilization protein MauG
scnpilot_expt_750_bf_scaffold_637_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25012..26400)
DNA (1389bp) protein (463aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003704DED rbh
selenium-binding protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
selenium-binding protein
scnpilot_expt_750_bf_scaffold_637_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26880..27854)
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003773E30 rbh
cysB; Cys regulon transcriptional activator, LysR family Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
cysB; transcriptional regulator CysB
scnpilot_expt_750_bf_scaffold_637_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28011..28352
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036D610F
TusE/DsrC/DsvC family sulfur relay protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
TusE/DsrC/DsvC family sulfur relay protein
Displaying items 1-30 of 51 in total

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